Title: Conditional Inference Procedures in a Permutation Test Framework
Diff between coin versions 1.0-8 dated 2009-10-30 and 1.0-9 dated 2009-12-30
Description: Conditional inference procedures for the general
independence problem including two-sample, K-sample
(non-parametric ANOVA), correlation, censored, ordered and
multivariate problems.
Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim
Zeileis
Maintainer: Torsten Hothorn
DESCRIPTION | 6 +++---
NEWS | 8 ++++++++
R/ExactDistributions.R | 6 ++++--
inst/doc/LegoCondInf.pdf |binary
inst/doc/MAXtest.pdf |binary
inst/doc/coin.pdf |binary
inst/doc/coin_implementation.pdf |binary
man/LocationTests.Rd | 5 ++++-
src/vandeWiel.c | 2 +-
tests/Examples/coin-Ex.Rout.save | 13 +++++++++++--
tests/bugfixes.R | 16 ++++++++++++++++
tests/bugfixes.Rout.save | 22 ++++++++++++++++++++++
12 files changed, 69 insertions(+), 9 deletions(-)
Title: Modelling Spatial Extremes
Diff between SpatialExtremes versions 1.4-0 dated 2009-10-16 and 1.5-0 dated 2009-12-30
More information about SpatialExtremes at CRAN
Description: This package proposes several approaches for spatial
extremes modelling.
Author: Mathieu Ribatet
Maintainer: Mathieu Ribatet
SpatialExtremes-1.4-0/SpatialExtremes/R/gradients.R |only
SpatialExtremes-1.4-0/SpatialExtremes/R/nsgeomgauss.R |only
SpatialExtremes-1.4-0/SpatialExtremes/inst/doc/Figures |only
SpatialExtremes-1.4-0/SpatialExtremes/src/gradients.c |only
SpatialExtremes-1.5-0/SpatialExtremes/ChangeLog | 1534
SpatialExtremes-1.5-0/SpatialExtremes/DESCRIPTION | 10
SpatialExtremes-1.5-0/SpatialExtremes/NEWS |only
SpatialExtremes-1.5-0/SpatialExtremes/R/brownresnick.R |only
SpatialExtremes-1.5-0/SpatialExtremes/R/covariance.R | 20
SpatialExtremes-1.5-0/SpatialExtremes/R/extcoeff.R | 9
SpatialExtremes-1.5-0/SpatialExtremes/R/fitcovmat.R | 342
SpatialExtremes-1.5-0/SpatialExtremes/R/fitmaxstable.R | 163
SpatialExtremes-1.5-0/SpatialExtremes/R/geomgauss.R | 247
SpatialExtremes-1.5-0/SpatialExtremes/R/madogram.R | 83
SpatialExtremes-1.5-0/SpatialExtremes/R/methods.R | 20
SpatialExtremes-1.5-0/SpatialExtremes/R/plots.R | 269
SpatialExtremes-1.5-0/SpatialExtremes/R/predict.R | 4
SpatialExtremes-1.5-0/SpatialExtremes/R/schlather.R | 274
SpatialExtremes-1.5-0/SpatialExtremes/R/schlatherind.R | 218
SpatialExtremes-1.5-0/SpatialExtremes/R/selection.R | 51
SpatialExtremes-1.5-0/SpatialExtremes/R/smith.R | 268
SpatialExtremes-1.5-0/SpatialExtremes/R/spatgev.R | 91
SpatialExtremes-1.5-0/SpatialExtremes/R/standardErrors.R |only
SpatialExtremes-1.5-0/SpatialExtremes/R/starting.values.R | 69
SpatialExtremes-1.5-0/SpatialExtremes/R/utils.R | 5
SpatialExtremes-1.5-0/SpatialExtremes/inst/doc/SpatialExtremesGuide.Rnw | 10
SpatialExtremes-1.5-0/SpatialExtremes/inst/doc/SpatialExtremesGuide.pdf |928007 +---------
SpatialExtremes-1.5-0/SpatialExtremes/inst/doc/references.bib | 44
SpatialExtremes-1.5-0/SpatialExtremes/man/TIC.Rd | 22
SpatialExtremes-1.5-0/SpatialExtremes/man/condmap.Rd | 38
SpatialExtremes-1.5-0/SpatialExtremes/man/covariance.Rd | 52
SpatialExtremes-1.5-0/SpatialExtremes/man/extcoeff.Rd | 3
SpatialExtremes-1.5-0/SpatialExtremes/man/fitcovariance.Rd | 12
SpatialExtremes-1.5-0/SpatialExtremes/man/fitcovmat.Rd | 9
SpatialExtremes-1.5-0/SpatialExtremes/man/fitmaxstab.Rd | 14
SpatialExtremes-1.5-0/SpatialExtremes/man/fitspatgev.Rd | 6
SpatialExtremes-1.5-0/SpatialExtremes/man/fmadogram.Rd | 8
SpatialExtremes-1.5-0/SpatialExtremes/man/internals.Rd | 2
SpatialExtremes-1.5-0/SpatialExtremes/man/lmadogram.Rd | 2
SpatialExtremes-1.5-0/SpatialExtremes/man/lsmaxstab.Rd |only
SpatialExtremes-1.5-0/SpatialExtremes/man/madogram.Rd | 8
SpatialExtremes-1.5-0/SpatialExtremes/man/map.Rd | 76
SpatialExtremes-1.5-0/SpatialExtremes/man/predict.maxstab.Rd | 5
SpatialExtremes-1.5-0/SpatialExtremes/man/qqextcoeff.Rd | 7
SpatialExtremes-1.5-0/SpatialExtremes/man/rgp.Rd | 6
SpatialExtremes-1.5-0/SpatialExtremes/man/simmaxstab.Rd | 6
SpatialExtremes-1.5-0/SpatialExtremes/src/brownResnick.c |only
SpatialExtremes-1.5-0/SpatialExtremes/src/covariance.c | 105
SpatialExtremes-1.5-0/SpatialExtremes/src/fitcovmat.c | 111
SpatialExtremes-1.5-0/SpatialExtremes/src/geomgauss.c | 46
SpatialExtremes-1.5-0/SpatialExtremes/src/header.h | 278
SpatialExtremes-1.5-0/SpatialExtremes/src/nsgeomgauss.c | 10
SpatialExtremes-1.5-0/SpatialExtremes/src/schlather.c | 42
SpatialExtremes-1.5-0/SpatialExtremes/src/schlatherind.c | 34
SpatialExtremes-1.5-0/SpatialExtremes/src/simgeometric.c | 2
SpatialExtremes-1.5-0/SpatialExtremes/src/simschlather.c | 2
SpatialExtremes-1.5-0/SpatialExtremes/src/simsmith.c | 5
SpatialExtremes-1.5-0/SpatialExtremes/src/smith.c | 30
SpatialExtremes-1.5-0/SpatialExtremes/src/smith3d.c | 31
SpatialExtremes-1.5-0/SpatialExtremes/src/standardErrors.c |only
SpatialExtremes-1.5-0/SpatialExtremes/src/weightedPairwiselik.c |only
SpatialExtremes-1.5-0/SpatialExtremes/src/weightedStandardErrors.c |only
62 files changed, 109381 insertions(+), 823329 deletions(-)
Permanent link
Title: Functions and Datasets for "Introduction to Scientific
Programming and Simulation Using R".
Diff between spuRs versions 1.0.3 dated 2009-06-16 and 1.0.4 dated 2009-12-30
Description: This package provides functions and datasets from the book
"Introduction to Scientific Programming and Simulation Using
R".
Author: Owen Jones, Robert Maillardet, Andrew Robinson, Olga Borovkova,
and Steven Carnie
Maintainer: Andrew Robinson
spuRs-1.0.3/spuRs/R/spuRs-internal.R |only
spuRs-1.0.4/spuRs/DESCRIPTION | 18 +++++++++---------
spuRs-1.0.4/spuRs/inst/resources/errata.pdf |binary
spuRs-1.0.4/spuRs/inst/resources/scripts/linesearch.r | 2 +-
spuRs-1.0.4/spuRs/man/spuRs-package.Rd | 2 +-
5 files changed, 11 insertions(+), 11 deletions(-)
Title: Partitioning using deletion, substitution, and addition moves
Diff between partDSA versions 0.5.1 dated 2009-05-05 and 0.6.0 dated 2009-12-30
Description: partDSA is a novel tool for generating a piecewise
constant estimation list of increasingly complex predictors
based on an intensive and comprehensive search over the entire
covariate space.
Author: Annette Molinaro
Maintainer: Annette Molinaro
partDSA-0.5.1/partDSA/examples/test.R |only
partDSA-0.5.1/partDSA/examples/testxval.exp |only
partDSA-0.5.1/partDSA/examples/tp.R |only
partDSA-0.5.1/partDSA/examples/yfactor.R |only
partDSA-0.6.0/partDSA/DESCRIPTION | 11
partDSA-0.6.0/partDSA/NAMESPACE | 1
partDSA-0.6.0/partDSA/R/algAlone2.R | 63 +
partDSA-0.6.0/partDSA/R/code.2.R | 956 +++++++++++-----------------
partDSA-0.6.0/partDSA/R/main.R | 51 -
partDSA-0.6.0/partDSA/R/newfunctions.R | 32
partDSA-0.6.0/partDSA/examples/testOutput.R |only
partDSA-0.6.0/partDSA/examples/testsuite.R |only
12 files changed, 452 insertions(+), 662 deletions(-)
Title: Nonparametric Analysis of Longitudinal Data in Factorial
Experiments
Diff between nparLD versions 1.1 dated 2009-10-15 and 1.2 dated 2009-12-30
Description: The package "nparLD" is designed to perform nonparametric
analysis of longitudinal data in factorial experiments.
Longitudinal data are those which are collected from the same
subjects over time, and they frequently arise in biological
sciences. Nonparametric methods do not require assumptions on
distributions of parameters, and are applicable to a variety of
data types (continuous, discrete, purely ordinal, and
dichotomous). Such methods are also robust with respect to
outliers and for small sample sizes.
Author: Kimihiro Noguchi
Maintainer: Kimihiro Noguchi
DESCRIPTION | 8 +-
R/f1.ld.f1.R | 122 ++++++++++++++++++++++++++++++++++++++------
R/f1.ld.f2.R | 142 +++++++++++++++++++++++++++++++++++++++++++++++++--
R/f2.ld.f1.R | 153 +++++++++++++++++++++++++++++++++++++++++++++++++++-----
R/ld.ci.R | 93 ++++++++++++++++++++++++++++++++--
R/ld.f1.R | 73 +++++++++++++++++++++++---
R/ld.f2.R | 111 ++++++++++++++++++++++++++++++++++++----
man/amylase.rd | 16 +++--
man/edema.rd | 5 +
man/f1.ld.f1.rd | 19 ++++--
man/f1.ld.f2.rd | 23 +++++---
man/f2.ld.f1.rd | 23 +++++---
man/ld.ci.rd | 47 +++++++++--------
man/ld.f1.rd | 10 ++-
man/ld.f2.rd | 19 ++++--
man/panic.rd | 5 +
man/panic2.rd | 4 +
man/plasma.rd | 4 +
man/shoulder.rd | 8 ++
man/tree.rd | 4 +
20 files changed, 765 insertions(+), 124 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Diff between BAS versions 0.4 dated 2009-12-28 and 0.45 dated 2009-12-30
Description: Package for Bayesian Model Averaging in linear models
using stochastic or deterministic sampling without replacement
from posterior distributions. Prior distributions on
coefficients are from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the Liang et
al hyper-g priors (JASA 2008). Other model selection criterian
include AIC and BIC. Sampling probabilities may be updated
based on the sampled models. Allows uniform or beta-binomial
prior distributions on models.
Author: Merlise Clyde
Maintainer: Merlise Clyde
CHANGELOG | 11 ++++-----
DESCRIPTION | 8 +++---
man/plot.bma.Rd | 5 ----
src/bayesglm.c | 67 ++++++++++++++++++++++++++++++++++++++------------------
src/ch2inv.f |only
src/family.c | 7 +++++
src/family.h | 2 -
src/sampling.h | 1
8 files changed, 65 insertions(+), 36 deletions(-)
Title: Help to fit of a parametric distribution to non-censored or
censored data
Diff between fitdistrplus versions 0.1-1 dated 2009-02-16 and 0.1-2 dated 2009-12-29
Description: Extends the fitdistr function (of the MASS package) with
several functions to help the fit of a parametric distribution
to non-censored or censored data. Censored data may contain
left censored, right censored and interval censored values,
with several lower and upper bounds.
Author: Marie Laure Delignette-Muller
Maintainer: Marie Laure Delignette-Muller
fitdistrplus-0.1-1/fitdistrplus/R/mledistcens.R |only
fitdistrplus-0.1-1/fitdistrplus/R/momdist.R |only
fitdistrplus-0.1-1/fitdistrplus/man/mledistcens.Rd |only
fitdistrplus-0.1-1/fitdistrplus/man/momdist.Rd |only
fitdistrplus-0.1-2/fitdistrplus/DESCRIPTION | 36 -
fitdistrplus-0.1-2/fitdistrplus/LICENCE |only
fitdistrplus-0.1-2/fitdistrplus/NAMESPACE |only
fitdistrplus-0.1-2/fitdistrplus/R/bootdist.R | 51 +
fitdistrplus-0.1-2/fitdistrplus/R/bootdistcens.R | 48 +
fitdistrplus-0.1-2/fitdistrplus/R/descdist.R | 30
fitdistrplus-0.1-2/fitdistrplus/R/fitdist.R | 310 +++++-----
fitdistrplus-0.1-2/fitdistrplus/R/fitdistcens.R | 46 +
fitdistrplus-0.1-2/fitdistrplus/R/mledist.R | 250 ++++++--
fitdistrplus-0.1-2/fitdistrplus/R/mmedist.R |only
fitdistrplus-0.1-2/fitdistrplus/R/plotdist.R | 56 +
fitdistrplus-0.1-2/fitdistrplus/R/plotdistcens.R | 26
fitdistrplus-0.1-2/fitdistrplus/inst/CITATION |only
fitdistrplus-0.1-2/fitdistrplus/inst/NEWS |only
fitdistrplus-0.1-2/fitdistrplus/inst/doc/Makefile |only
fitdistrplus-0.1-2/fitdistrplus/inst/doc/intro2fitdistrplus.Rnw |only
fitdistrplus-0.1-2/fitdistrplus/inst/doc/intro2fitdistrplus.bib |only
fitdistrplus-0.1-2/fitdistrplus/inst/doc/intro2fitdistrplus.pdf |binary
fitdistrplus-0.1-2/fitdistrplus/inst/gpl-3.0.txt |only
fitdistrplus-0.1-2/fitdistrplus/man/bootdist.Rd | 14
fitdistrplus-0.1-2/fitdistrplus/man/bootdistcens.Rd | 14
fitdistrplus-0.1-2/fitdistrplus/man/descdist.Rd | 2
fitdistrplus-0.1-2/fitdistrplus/man/fitdist.Rd | 199 ++++--
fitdistrplus-0.1-2/fitdistrplus/man/fitdistcens.Rd | 70 +-
fitdistrplus-0.1-2/fitdistrplus/man/mledist.Rd | 111 ++-
fitdistrplus-0.1-2/fitdistrplus/man/mmedist.Rd |only
30 files changed, 936 insertions(+), 327 deletions(-)
Title: Statistical inference for partially observed Markov processes
Diff between pomp versions 0.25-7 dated 2009-11-15 and 0.26-3 dated 2009-12-29
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall
Maintainer: Aaron A. King
pomp-0.25-7/pomp/data/euler.sir.rda |only
pomp-0.25-7/pomp/data/ou2.rda |only
pomp-0.25-7/pomp/data/rw2.rda |only
pomp-0.25-7/pomp/data/verhulst.rda |only
pomp-0.26-3/pomp/DESCRIPTION | 11 -
pomp-0.26-3/pomp/R/mif.R | 138 ++++++++++--------
pomp-0.26-3/pomp/R/pfilter-mif.R | 10 +
pomp-0.26-3/pomp/R/pfilter.R | 22 ++
pomp-0.26-3/pomp/data/euler.sir.R |only
pomp-0.26-3/pomp/data/ou2.R |only
pomp-0.26-3/pomp/data/rw2.R |only
pomp-0.26-3/pomp/data/verhulst.R |only
pomp-0.26-3/pomp/inst/ChangeLog | 42 +++++
pomp-0.26-3/pomp/inst/doc/advanced_topics_in_pomp.pdf |binary
pomp-0.26-3/pomp/inst/doc/intro_to_pomp.Rnw | 29 +--
pomp-0.26-3/pomp/inst/doc/intro_to_pomp.pdf |binary
pomp-0.26-3/pomp/inst/examples/euler_sir.R | 23 +--
pomp-0.26-3/pomp/man/pfilter.Rd | 10 +
pomp-0.26-3/pomp/tests/ou2-forecast.R |only
pomp-0.26-3/pomp/tests/ou2-forecast.Rout.save |only
pomp-0.26-3/pomp/tests/ou2-mif.R | 20 ++
pomp-0.26-3/pomp/tests/ou2-mif.Rout.save | 20 ++
22 files changed, 236 insertions(+), 89 deletions(-)
More information about partitionMetric at CRAN
Permanent link
Title: A package for graphical modelling in R
Diff between gRbase versions 1.2.0 dated 2009-12-28 and 1.3.0 dated 2009-12-29
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 7 +++++++
DESCRIPTION | 6 +++---
INDEX | 2 ++
R/combnPrimR.R |only
inst/doc/gRbase.pdf |binary
man/combnPrim.Rd |only
src/combnC.c |only
src/combnPrimC.c |only
src/combnPrimC.h |only
src/f2c.h |only
10 files changed, 12 insertions(+), 3 deletions(-)
Title: Kalman filter and smoothers for exponential family state space
models.
Diff between KFAS versions 0.4.8 dated 2009-12-14 and 0.4.9 dated 2009-12-29
Description: Package KFAS provides functions for Kalman filtering,
state, disturbance and simulation smoothing, forecasting and
simulation of state space models. All functions can use exact
diffuse initialisation when distributions of some or all
elements of initial state vector are unknown. Filtering, state
smoothing and simulation functions use sequential processing
algorithm, which is faster than standard approach, and it also
allows singularity of prediction error variance matrix. KFAS
also contains function for computing the likelihood of
exponential family state space models and function for state
smoothing of exponential family state space models.
Author: Jouni Helske
Maintainer: Jouni Helske
DESCRIPTION | 30 ++++++++++++++----------------
R/KFAS.R | 7 ++-----
man/eflik.Rd | 21 +++++++++++----------
man/eflik0.Rd | 13 +++++++------
man/kf.Rd | 4 ++--
5 files changed, 36 insertions(+), 39 deletions(-)
Title: Lambert W parameter estimation, plots, simulation (Analysis of
skewed data)
Diff between LambertW versions 0.1.6 dated 2009-04-14 and 0.1.8 dated 2009-12-29
Description: Lambert W random variables (RV) offer a new way of dealing
with slightly skewed data. It is based on an input/ouput
framework - for details see References. This package contains
the most important functions to perform an adequate analysis.
Lambert W data can be simulated, parameters estimated and
results can be plotted in a proper way. Comments, suggestions,
improvements, error reports, ... are more than welcome. Feel
free to contact me.
Author: Georg M. Goerg
Maintainer: Georg M. Goerg
LambertW-0.1.6/LambertW/R/KS.test.t.R |only
LambertW-0.1.6/LambertW/R/delta.test.R |only
LambertW-0.1.6/LambertW/man/IGMM.default.Rd |only
LambertW-0.1.6/LambertW/man/KS.test.t.Rd |only
LambertW-0.1.6/LambertW/man/MLE_LambertW.default.Rd |only
LambertW-0.1.6/LambertW/man/W_1.Rd |only
LambertW-0.1.6/LambertW/man/W_delta_1.Rd |only
LambertW-0.1.6/LambertW/man/d1W.Rd |only
LambertW-0.1.6/LambertW/man/d1W_1.Rd |only
LambertW-0.1.6/LambertW/man/dLambertW.Rd |only
LambertW-0.1.6/LambertW/man/delta.test.Rd |only
LambertW-0.1.6/LambertW/man/mom.LambertW.U.Gauss.Rd |only
LambertW-0.1.6/LambertW/man/pLambertW.Rd |only
LambertW-0.1.6/LambertW/man/plot.LWest.Rd |only
LambertW-0.1.6/LambertW/man/print.summary.LWest.Rd |only
LambertW-0.1.6/LambertW/man/qLambertW.Rd |only
LambertW-0.1.6/LambertW/man/qqLambertW.Rd |only
LambertW-0.1.6/LambertW/man/rLambertW.Rd |only
LambertW-0.1.6/LambertW/man/summary.LWest.Rd |only
LambertW-0.1.8/LambertW/DESCRIPTION | 20 +-
LambertW-0.1.8/LambertW/R/H_delta.R | 4
LambertW-0.1.8/LambertW/R/IGMM.default.R | 62 +++-----
LambertW-0.1.8/LambertW/R/LambertW-internal.R | 4
LambertW-0.1.8/LambertW/R/MLE_LambertW.R | 2
LambertW-0.1.8/LambertW/R/MLE_LambertW.default.R | 2
LambertW-0.1.8/LambertW/R/W_delta.R | 4
LambertW-0.1.8/LambertW/R/W_delta_1.R | 4
LambertW-0.1.8/LambertW/R/d1W.R | 2
LambertW-0.1.8/LambertW/R/d1W_1.R | 2
LambertW-0.1.8/LambertW/R/dLambertW.R | 100 ++++++-------
LambertW-0.1.8/LambertW/R/delta.01.R | 26 ++-
LambertW-0.1.8/LambertW/R/delta.GMM.R | 2
LambertW-0.1.8/LambertW/R/get.input.R | 2
LambertW-0.1.8/LambertW/R/h.r | 2
LambertW-0.1.8/LambertW/R/igmm.r | 2
LambertW-0.1.8/LambertW/R/ks.test.t.R |only
LambertW-0.1.8/LambertW/R/mc.R | 2
LambertW-0.1.8/LambertW/R/mom.LambertW.U.Gauss.R | 4
LambertW-0.1.8/LambertW/R/mom.LambertW.X.Gauss.R | 30 ++--
LambertW-0.1.8/LambertW/R/normfit.R | 150 ++++++++++----------
LambertW-0.1.8/LambertW/R/pLambertW.R | 101 ++++++-------
LambertW-0.1.8/LambertW/R/p_1.R | 4
LambertW-0.1.8/LambertW/R/plot.LWest.R | 138 +++++++++---------
LambertW-0.1.8/LambertW/R/print.summary.LWest.R | 2
LambertW-0.1.8/LambertW/R/qLambertW.R | 79 ++++------
LambertW-0.1.8/LambertW/R/qqLambertW.R | 56 +++----
LambertW-0.1.8/LambertW/R/rLambertW.R | 20 +-
LambertW-0.1.8/LambertW/R/sd.R | 2
LambertW-0.1.8/LambertW/R/summary.LWest.R | 2
LambertW-0.1.8/LambertW/R/support.R | 2
LambertW-0.1.8/LambertW/R/vec.norm.R | 6
LambertW-0.1.8/LambertW/R/w.r | 2
LambertW-0.1.8/LambertW/R/w_1.r | 2
LambertW-0.1.8/LambertW/data/AA.rda |binary
LambertW-0.1.8/LambertW/man/AA.Rd | 2
LambertW-0.1.8/LambertW/man/H.Rd | 29 +++
LambertW-0.1.8/LambertW/man/H_delta.Rd | 21 ++
LambertW-0.1.8/LambertW/man/IGMM.Rd | 47 +++---
LambertW-0.1.8/LambertW/man/LWest-methods.Rd |only
LambertW-0.1.8/LambertW/man/LambertW-methods.Rd |only
LambertW-0.1.8/LambertW/man/LambertW-package.Rd | 38 ++++-
LambertW-0.1.8/LambertW/man/MLE_LambertW.Rd | 49 +++---
LambertW-0.1.8/LambertW/man/W.Rd | 58 +++++--
LambertW-0.1.8/LambertW/man/W_delta.Rd | 32 +++-
LambertW-0.1.8/LambertW/man/delta.01.Rd | 24 +--
LambertW-0.1.8/LambertW/man/delta.GMM.Rd | 28 ++-
LambertW-0.1.8/LambertW/man/get.input.Rd | 26 +--
LambertW-0.1.8/LambertW/man/ks.test.t.Rd |only
LambertW-0.1.8/LambertW/man/mc.Rd | 8 -
LambertW-0.1.8/LambertW/man/mom.LambertW.X.Gauss.Rd | 47 +++---
LambertW-0.1.8/LambertW/man/normfit.Rd | 37 ++--
LambertW-0.1.8/LambertW/man/p_1.Rd | 35 +++-
LambertW-0.1.8/LambertW/man/support.Rd | 13 -
LambertW-0.1.8/LambertW/man/vec.norm.Rd | 20 +-
74 files changed, 753 insertions(+), 603 deletions(-)
Title: An IPSUR Plugin for the R Commander
Diff between RcmdrPlugin.IPSUR versions 0.1-5 dated 2008-08-11 and 0.1-6 dated 2009-12-28
More information about RcmdrPlugin.IPSUR at CRAN
Description: This package is an R Commander plugin that accompanies
IPSUR, an Introduction to Probability and Statistics Using R.
Author: G. Jay Kerns
Maintainer: G. Jay Kerns
DESCRIPTION | 37 ++++++++++++++++++++++---------------
inst/etc/menus.txt | 2 +-
man/IPSUR-package.Rd | 19 +++++++++----------
3 files changed, 32 insertions(+), 26 deletions(-)
Permanent link
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Diff between BAS versions 0.3 dated 2009-05-29 and 0.4 dated 2009-12-28
Description: Package for Bayesian Model Averaging in linear models
using stochastic or deterministic sampling without replacement
from posterior distributions. Prior distributions on
coefficients are from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the Liang et
al hyper-g priors (JASA 2008). Other model selection criterian
include AIC and BIC. Sampling probabilities may be updated
based on the sampled models. Allows uniform or beta-binomial
prior distributions on models.
Author: Merlise Clyde
Maintainer: Merlise Clyde
CHANGELOG | 8
DESCRIPTION | 22 +-
INDEX | 4
R/as.matrix.R | 2
R/bas.R | 18 +
R/coefpriors.R |only
R/predict.bma.R | 7
inst/CITATION |only
man/BAS-package.Rd | 11 -
man/bas.Rd | 6
man/coefpriors.Rd |only
man/gprior.Rd |only
src/bayesglm.c | 502 +++++++++++++++++++---------------------------------
src/bayesreg.c | 10 -
src/deterministic.c | 6
src/family.c |only
src/family.h |only
src/sampleworep.c | 41 ++--
src/sampling.h | 41 ++--
19 files changed, 299 insertions(+), 379 deletions(-)
Title: statistical disclosure control for tabular data
Diff between sdcTable versions 0.0.6 dated 2009-12-02 and 0.0.8 dated 2009-12-28
Description: R-Package for statistical disclosure control for tabular
data.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl
DESCRIPTION | 8
R/createFullData.r | 377 +++++++++++++++++++++++++++++++++++++++-------
R/genCodesFromFile.r | 57 +++---
R/processTableHYPERCUBE.r | 27 ++-
R/protectTable.r | 24 ++
R/zzz.R | 2
man/createFullData.Rd | 133 +++++++++-------
7 files changed, 479 insertions(+), 149 deletions(-)
Title: Microeconomic Analysis and Modelling
Diff between micEcon versions 0.5-22 dated 2009-07-21 and 0.6-0 dated 2009-12-28
Description: Tools for microeconomic analysis and microeconomic
modelling
Author: Arne Henningsen
Maintainer: Arne Henningsen
micEcon-0.5-22/micEcon/R/aidsBestA0.R |only
micEcon-0.5-22/micEcon/R/aidsCalc.R |only
micEcon-0.5-22/micEcon/R/aidsCheckCoef.R |only
micEcon-0.5-22/micEcon/R/aidsCoef.R |only
micEcon-0.5-22/micEcon/R/aidsCoefNames.R |only
micEcon-0.5-22/micEcon/R/aidsConcav.R |only
micEcon-0.5-22/micEcon/R/aidsConsist.R |only
micEcon-0.5-22/micEcon/R/aidsElas.R |only
micEcon-0.5-22/micEcon/R/aidsElasJacobian.R |only
micEcon-0.5-22/micEcon/R/aidsEst.R |only
micEcon-0.5-22/micEcon/R/aidsEstMethod.R |only
micEcon-0.5-22/micEcon/R/aidsJacobian.R |only
micEcon-0.5-22/micEcon/R/aidsMono.R |only
micEcon-0.5-22/micEcon/R/aidsPx.R |only
micEcon-0.5-22/micEcon/R/aidsRestr.R |only
micEcon-0.5-22/micEcon/R/aidsSystem.R |only
micEcon-0.5-22/micEcon/R/aidsUtility.R |only
micEcon-0.5-22/micEcon/R/aidsUtilityDeriv.R |only
micEcon-0.5-22/micEcon/R/aidsUtils.R |only
micEcon-0.5-22/micEcon/R/checkNames.R |only
micEcon-0.5-22/micEcon/R/coef.aidsEst.R |only
micEcon-0.5-22/micEcon/R/coefTable.R |only
micEcon-0.5-22/micEcon/R/colMedians.R |only
micEcon-0.5-22/micEcon/R/compPlot.R |only
micEcon-0.5-22/micEcon/R/df.residual.aidsEst.R |only
micEcon-0.5-22/micEcon/R/elas.aidsEst.R |only
micEcon-0.5-22/micEcon/R/fitted.aidsEst.R |only
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micEcon-0.5-22/micEcon/R/lrtest.aidsEst.R |only
micEcon-0.5-22/micEcon/R/predict.aidsEst.R |only
micEcon-0.5-22/micEcon/R/print.aidsConcav.R |only
micEcon-0.5-22/micEcon/R/print.aidsConsist.R |only
micEcon-0.5-22/micEcon/R/print.aidsElas.R |only
micEcon-0.5-22/micEcon/R/print.aidsEst.R |only
micEcon-0.5-22/micEcon/R/print.aidsMono.R |only
micEcon-0.5-22/micEcon/R/print.coef.aidsEst.R |only
micEcon-0.5-22/micEcon/R/print.summary.aidsElas.R |only
micEcon-0.5-22/micEcon/R/print.summary.aidsEst.R |only
micEcon-0.5-22/micEcon/R/summary.aidsElas.R |only
micEcon-0.5-22/micEcon/R/summary.aidsEst.R |only
micEcon-0.5-22/micEcon/R/utils.R |only
micEcon-0.5-22/micEcon/R/vcov.aidsEst.R |only
micEcon-0.5-22/micEcon/data/Blanciforti86.txt |only
micEcon-0.5-22/micEcon/data/USMeatConsump.tab |only
micEcon-0.5-22/micEcon/man/Blanciforti86.Rd |only
micEcon-0.5-22/micEcon/man/USMeatConsump.Rd |only
micEcon-0.5-22/micEcon/man/aidsBestA0.Rd |only
micEcon-0.5-22/micEcon/man/aidsCalc.Rd |only
micEcon-0.5-22/micEcon/man/aidsConcav.Rd |only
micEcon-0.5-22/micEcon/man/aidsConsist.Rd |only
micEcon-0.5-22/micEcon/man/aidsElas.Rd |only
micEcon-0.5-22/micEcon/man/aidsEst.Rd |only
micEcon-0.5-22/micEcon/man/aidsMono.Rd |only
micEcon-0.5-22/micEcon/man/aidsPx.Rd |only
micEcon-0.5-22/micEcon/man/aidsUtility.Rd |only
micEcon-0.5-22/micEcon/man/coef.aidsEst.Rd |only
micEcon-0.5-22/micEcon/man/coefTable.Rd |only
micEcon-0.5-22/micEcon/man/colMedians.Rd |only
micEcon-0.5-22/micEcon/man/compPlot.Rd |only
micEcon-0.5-22/micEcon/man/df.residual.aidsEst.Rd |only
micEcon-0.5-22/micEcon/man/fitted.aidsEst.Rd |only
micEcon-0.5-22/micEcon/man/insertCol.Rd |only
micEcon-0.5-22/micEcon/man/insertRow.Rd |only
micEcon-0.5-22/micEcon/man/logLik.aidsEst.Rd |only
micEcon-0.5-22/micEcon/man/lrtest.aidsEst.Rd |only
micEcon-0.5-22/micEcon/man/micEcon-internal.Rd |only
micEcon-0.5-22/micEcon/man/quasiconcavity.Rd |only
micEcon-0.5-22/micEcon/man/rSquared.Rd |only
micEcon-0.5-22/micEcon/man/semidefiniteness.Rd |only
micEcon-0.5-22/micEcon/man/summary.aidsElas.Rd |only
micEcon-0.5-22/micEcon/man/summary.aidsEst.Rd |only
micEcon-0.5-22/micEcon/man/symMatrix.Rd |only
micEcon-0.5-22/micEcon/man/triang.Rd |only
micEcon-0.5-22/micEcon/man/vcov.aidsEst.Rd |only
micEcon-0.5-22/micEcon/man/vecli.Rd |only
micEcon-0.5-22/micEcon/man/vecli2m.Rd |only
micEcon-0.5-22/micEcon/man/veclipos.Rd |only
micEcon-0.5-22/micEcon/tests/aids.R |only
micEcon-0.5-22/micEcon/tests/aids.Rout.save |only
micEcon-0.5-22/micEcon/tests/colMediansTest.R |only
micEcon-0.5-22/micEcon/tests/colMediansTest.Rout.save |only
micEcon-0.5-22/micEcon/tests/insertColRow.R |only
micEcon-0.5-22/micEcon/tests/insertColRow.Rout.save |only
micEcon-0.6-0/micEcon/DESCRIPTION | 13
micEcon-0.6-0/micEcon/INDEX | 43
micEcon-0.6-0/micEcon/NAMESPACE |only
micEcon-0.6-0/micEcon/NEWS |only
micEcon-0.6-0/micEcon/R/checkConsist.R | 33
micEcon-0.6-0/micEcon/man/checkConsist.Rd | 2
micEcon-0.6-0/micEcon/man/elas.Rd | 2
micEcon-0.6-0/micEcon/tests/cesTest.Rout.save | 51
micEcon-0.6-0/micEcon/tests/cobbDouglasTest.Rout.save | 23
micEcon-0.6-0/micEcon/tests/indices.R | 141
micEcon-0.6-0/micEcon/tests/indices.Rout.save | 7135 ++++++++----------
micEcon-0.6-0/micEcon/tests/npregHomTest.Rout.save | 23
micEcon-0.6-0/micEcon/tests/quadFunc.Rout.save | 1777 +---
micEcon-0.6-0/micEcon/tests/snqProfit.Rout.save | 33
micEcon-0.6-0/micEcon/tests/translog.Rout.save | 1405 +--
micEcon-0.6-0/micEcon/tests/translogCost.Rout.save | 23
99 files changed, 4867 insertions(+), 5837 deletions(-)
Title: Perform SQL Selects on R Data Frames
Diff between sqldf versions 0-2.0 dated 2009-12-24 and 0-2.1 dated 2009-12-28
Description: Manipulate R data frames using SQL.
Author: G. Grothendieck
Maintainer: G. Grothendieck
DESCRIPTION | 10 +++++-----
R/sqldf.R | 3 ++-
inst/NEWS | 9 +++++++++
3 files changed, 16 insertions(+), 6 deletions(-)
Title: Inline C, C++, Fortran function calls from R
Diff between inline versions 0.3.3 dated 2007-08-25 and 0.3.4 dated 2009-12-28
Description: Functionality to dynamically define R functions and S4
methods with in-lined C, C++ or Fortran code supporting .C and
.Call calling conventions.
Author: Oleg Sklyar, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel
Maintainer: Oleg Sklyar
DESCRIPTION | 31 +++++++++------
R/cfunction.R | 110 +++++++++++++++++++++++++++++++++++--------------------
man/cfunction.Rd | 41 +++++++++++++++++---
3 files changed, 124 insertions(+), 58 deletions(-)
Title: A package for graphical modelling in R
Diff between gRbase versions 1.1.2 dated 2009-06-28 and 1.2.0 dated 2009-12-28
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 20 ++++++++++++++++++++
DESCRIPTION | 6 +++---
INDEX | 2 ++
R/GraphAlgo-MPD.R |only
R/GraphAlgo-minimalTriang.R |only
R/fit.R |only
R/gRfit.R | 2 +-
R/ggm.R | 10 +++++-----
R/hllm.R | 10 +++++-----
R/utility.R | 6 +++++-
inst/doc/gRbase.pdf |binary
man/GraphAlgo-minimalTriang.Rd |only
man/GraphAlgo-mpd.Rd |only
man/cov2pcor.Rd | 8 +++++++-
man/gRfit.Rd | 4 ++--
man/hllm.Rd | 4 ++--
16 files changed, 52 insertions(+), 20 deletions(-)
Title: Tools for testing and improving accuracy of statistical results.
Diff between accuracy versions 1.34 dated 2009-11-25 and 1.35 dated 2009-12-28
Description: This is a suite of tools designed to test and improve the
accuracy of statistical computation, including: Summarization
of the sensitivity of linear and non-linear models (lm, glm,
mle, nls) to measurement and numerical error; Sensitivity
analysis of dozens of models as run through Zelig; A
generalized cholesky method for correcting non-invertable
Hessians; Tests for the global optimality of non-linear
regression and maximum likelihood results; Tools for obtaining
true random numbers using entropy collected from the system
and/or entropy servers on the internet; A method for converting
floating point numbers to normalized fractions; Benchmark data
for checking the accuracy of basic distribution functions.
Author: Micah Altman, Jeff Gill, Michael P. McDonald
Maintainer: Micah Altman
DESCRIPTION | 8
R/trueRandom.R | 3
inst/doc/Rplots.pdf | 1273 ++++++++++++++++++++++++----------
inst/doc/accuracy_vignette-plot1a.eps | 580 +++++++--------
inst/doc/accuracy_vignette-plot1a.pdf | 674 +++++++++---------
inst/doc/accuracy_vignette-plot2a.eps | 616 +++++++++++++++-
inst/doc/accuracy_vignette-plot2a.pdf | 624 +++++++++++++++-
inst/doc/accuracy_vignette.aux | 28
inst/doc/accuracy_vignette.log | 48 -
inst/doc/accuracy_vignette.pdf |binary
inst/doc/accuracy_vignette.tex | 125 ++-
11 files changed, 2861 insertions(+), 1118 deletions(-)
Title: Time Series Database Interface extensions for get.hist.quote
Diff between TShistQuote versions 2009.7-1 dated 2009-07-27 and 2009.12-1 dated 2009-12-28
Description: Provides methods for generics in the TSdbi package to
retrieve data from historical quote URLs.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 10 +++++-----
NEWS | 44 +++++++++++++++++++++++++++-----------------
inst/doc/TShistQuote.Stex | 8 ++++----
inst/doc/TShistQuote.pdf |binary
4 files changed, 36 insertions(+), 26 deletions(-)
Title: Bayesian treed Gaussian process models
Diff between tgp versions 2.2-4 dated 2009-11-22 and 2.3 dated 2009-12-26
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with jumps to
the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic Gaussian processes.
Provides 1-d and 2-d plotting functions (with projection and
slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported. Sequential experimental
design and adaptive sampling functions are also provided,
including ALM, ALC, and expected improvement. The latter
supports derivative-free optimization of noisy black-box
functions.
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
ChangeLog | 8 +
DESCRIPTION | 6 -
inst/doc/cat.iRnw | 51 ++++++++--
inst/doc/it.iRnw | 102 ++++++++++++---------
inst/doc/optim.iRnw | 220 ++++++++++++++++++++++++----------------------
inst/doc/sens.iRnw | 130 ++++++++++++++-------------
inst/doc/tgp2.pdf |binary
man/btgp.Rd | 46 ---------
man/plot.tgp.Rd | 4
man/tgp.default.params.Rd | 2
10 files changed, 303 insertions(+), 266 deletions(-)
Title: Univariate and Multivariate Spatial Modeling
Diff between spBayes versions 0.1-3 dated 2009-06-24 and 0.1-4 dated 2009-12-26
Description: spBayes fits univariate and multivariate models with
Markov chain Monte Carlo (MCMC).
Author: Andrew O. Finley
Maintainer: Andrew O. Finley
DESCRIPTION | 8
R/dic.R | 664 ++++++++++++++++--------------------------
R/spGLM.R | 215 +++++++++----
R/spMvGLM.R | 223 +++++++++-----
inst/doc/spBayes-vignette.pdf |binary
man/spDIC.Rd | 90 +----
man/spGGT.Rd | 2
man/spGLM.Rd | 140 +++-----
man/spLM.Rd | 6
man/spMvGLM.Rd | 27 +
man/spMvLM.Rd | 6
man/spPredict.Rd | 3
src/spGLM.cpp | 3
src/spGLM_AMCMC.cpp |only
src/spMvGLM.cpp | 11
src/spMvGLM_AMCMC.cpp |only
src/spMvLM.cpp | 25 -
src/spPPGLM.cpp | 2
src/spPPGLM_AMCMC.cpp |only
src/spPPMvGLM.cpp | 14
src/spPPMvGLM_AMCMC.cpp |only
src/spPPMvLM.cpp | 37 +-
src/util.cpp | 57 +++
src/util.h | 4
24 files changed, 771 insertions(+), 766 deletions(-)
Title: Demonstrations for teaching and learning
Diff between TeachingDemos versions 2.4 dated 2009-06-26 and 2.5 dated 2009-12-26
Description: This package is a set of demonstration functions that can
be used in a classroom to demonstrate statistical concepts, or
on your own to better understand the concepts or the
programming.
Author: Greg Snow
Maintainer: Greg Snow
TeachingDemos-2.4/TeachingDemos/SyncToy_726f062a-4434-4055-9168-9e4dfdf9d479.dat |only
TeachingDemos-2.4/TeachingDemos/SyncToy_cc1ca190-d98a-47e0-ad69-312b9db9af9b.dat |only
TeachingDemos-2.5/TeachingDemos/DESCRIPTION | 8 +++--
TeachingDemos-2.5/TeachingDemos/NAMESPACE | 10 ++++--
TeachingDemos-2.5/TeachingDemos/NEWS | 10 ++++++
TeachingDemos-2.5/TeachingDemos/R/HWidentify.R |only
TeachingDemos-2.5/TeachingDemos/R/lattice.demo.R | 2 +
TeachingDemos-2.5/TeachingDemos/R/mysymbols.R | 9 ++++--
TeachingDemos-2.5/TeachingDemos/R/plot.dice.R | 9 +++---
TeachingDemos-2.5/TeachingDemos/R/sigma.test.R |only
TeachingDemos-2.5/TeachingDemos/R/tests.R |only
TeachingDemos-2.5/TeachingDemos/R/vis.test.R |only
TeachingDemos-2.5/TeachingDemos/man/HWidentify.Rd |only
TeachingDemos-2.5/TeachingDemos/man/TeachingDemos-package.Rd | 4 ++
TeachingDemos-2.5/TeachingDemos/man/bct.Rd | 2 -
TeachingDemos-2.5/TeachingDemos/man/ccc.Rd | 1
TeachingDemos-2.5/TeachingDemos/man/cortest.Rd |only
TeachingDemos-2.5/TeachingDemos/man/identify.Map.Rd | 6 ++++
TeachingDemos-2.5/TeachingDemos/man/mysymbols.Rd | 3 ++
TeachingDemos-2.5/TeachingDemos/man/normtest.Rd |only
TeachingDemos-2.5/TeachingDemos/man/project.Map.Rd | 10 +++++-
TeachingDemos-2.5/TeachingDemos/man/recenter.Map.Rd | 5 ++-
TeachingDemos-2.5/TeachingDemos/man/rgl.Map.Rd | 5 ++-
TeachingDemos-2.5/TeachingDemos/man/shadowtext.Rd |only
TeachingDemos-2.5/TeachingDemos/man/sigma.test.Rd |only
TeachingDemos-2.5/TeachingDemos/man/state.vbm.Rd | 15 +++++-----
TeachingDemos-2.5/TeachingDemos/man/vis.test.Rd |only
27 files changed, 71 insertions(+), 28 deletions(-)
More information about RcmdrPlugin.sos at CRAN
Permanent link
Title: R Utilities Accompanying the Software Package BayesX
Diff between BayesX versions 0.2-3 dated 2009-07-18 and 0.2-4 dated 2009-12-26
Description: This package provides functionality for exploring and
visualising estimation results obtained with the software
package BayesX for structured additive regression. It also
provides functions that allow to read, write and manipulate map
objects that are required in spatial analyses performed with
BayesX, a free software for estimating structured additive
regression models (http://www.stat.uni-muenchen.de/~bayesx).
Author: Thomas Kneib, Felix Heinzl, Andreas Brezger, Daniel Sabanes
Bove
Maintainer: Thomas Kneib
DESCRIPTION | 8 -
R/bnd2gra.R | 26 ++++
R/drawmap.R | 66 +++++-------
R/extractSamples.R | 264 +++++++++++++++++++++++++++++++++++---------------
R/getNumbers.R |only
inst/ChangeLog | 23 +++-
man/extractSamples.Rd | 14 ++
man/getNumbers.Rd |only
8 files changed, 280 insertions(+), 121 deletions(-)
Author: G. Grothendieck
Diff between sqldf versions 0-1.7 dated 2009-09-24 and 0-2.0 dated 2009-12-24
Maintainer: G. Grothendieck
Title: Perform SQL Selects on R Data Frames
Description: Manipulate R data frames using SQL.
DESCRIPTION | 11 +++---
R/sqldf.R | 85 ++++++++++++++++++++++++++++++++++++++++++-----
demo/sqldf-groupchoose.R | 12 +++---
inst/NEWS | 21 +++++++++++
inst/trcomma2dot.vbs |only
man/read.csv.sql.Rd | 14 ++++++-
man/sqldf.Rd | 63 +++++++++++++++++++++++++++++-----
7 files changed, 173 insertions(+), 33 deletions(-)
Author: Bruno Falissard
Diff between psy versions 0.7 dated 2005-06-27 and 1.0 dated 2009-12-24
Maintainer: Bruno Falissard
Title: Various procedures used in psychometry
Description: Kappa, ICC, Cronbach alpha, screeplot, mtmm
DESCRIPTION | 21 +++++++++-----
R/ckappa.R | 2 -
R/cronbach.R | 2 -
R/fpca.R | 76 +++++++++++++++++++++++++++++++++++++++++++----------
R/icc.R | 2 -
R/lkappa.R | 2 -
R/mdspca.R | 2 -
R/mtmm.R |only
R/scree.plot.R | 2 -
R/sphpca.R | 19 ++++++-------
R/wkappa.R | 2 -
data/ehd.rda |only
data/expsy.rda |binary
data/sleep.rda |binary
man/ckappa.Rd | 1
man/ehd.Rd |only
man/fpca.Rd | 23 ++++++++++------
man/icc.Rd | 2 -
man/lkappa.Rd | 2 -
man/mdspca.Rd | 3 --
man/mtmm.Rd |only
man/psy-package.Rd |only
man/sleep.Rd | 2 -
man/sphpca.Rd | 11 +------
24 files changed, 113 insertions(+), 61 deletions(-)
Author: Thoralf Mildenberger, Yves Rozenholc, David Zasada.
Diff between histogram versions 0.0-22 dated 2009-12-16 and 0.0-23 dated 2009-12-24
Maintainer: Thoralf Mildenberger
Title: Construction of regular and irregular histograms with different
options for automatic choice of bins
Description: Automatic construction of regular and irregular histograms
as described in Rozenholc/Mildenberger/Gather (2009).
DESCRIPTION | 8 ++++----
R/histogram.regular.R | 10 +++++-----
2 files changed, 9 insertions(+), 9 deletions(-)
Author: Rob J Hyndman
Diff between forecast versions 2.02 dated 2009-12-23 and 2.03 dated 2009-12-24
Maintainer: Rob J Hyndman
Title: Forecasting functions for time series
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
ChangeLog | 3 +++
DESCRIPTION | 6 +++---
R/arima.R | 8 ++++++--
R/newarima2.R | 27 +++++++++++++++++----------
man/auto.arima.Rd | 3 ++-
5 files changed, 31 insertions(+), 16 deletions(-)
Author: Fang Chang
Diff between clues versions 0.3.9 dated 2009-11-17 and 0.4.0 dated 2009-12-24
Maintainer: Fang Chang
Title: Clustering Method Based on Local Shrinking
Description: The package contains functions for automatically
estimating the number of clusters and getting the final cluster
partition without any input parameter except the stopping rule
for convergence. The package also provides functions to
evaluate and compare the performances of partitions of a data
set both numerically and graphically.
DESCRIPTION | 8
R/view.R | 16 -
inst/doc/clues_intro.pdf | 533 ++++++++++++++++++++++-------------------------
man/plotClusters.Rd | 5
src/clustering2.f95 | 37 +--
src/dmedian.f95 | 2
6 files changed, 293 insertions(+), 308 deletions(-)
Author: Stefano Iacus
Diff between cem versions 1.0.128 dated 2009-11-08 and 1.0.142 dated 2009-12-24
Maintainer: Gary King
Title: CEM: Software for Coarsened Exact Matching
Description: This program implements the coarsened exact matching
algorithm (and many extensions) described in Stefano M. Iacus,
Gary King, and Giuseppe Porro, "Causal Inference Without
Balance Checking: Coarsened Exact Matching,"
http://gking.harvard.edu/files/abs/cem-plus-abs.shtml
DESCRIPTION | 10
NAMESPACE | 2
R/cemspace.R |only
R/imbspace.R | 9
R/imbspace.plot.R | 304 +++++++--
R/relax.cem.R | 2
R/search.match.R |only
data/LLvsPSID.rda |only
inst/doc/Rplots.pdf | 4
inst/doc/cem.Rnw | 2
inst/doc/cem.pdf | 1663 ++++++++++++++++++++++++--------------------------
inst/doc/coarsen1.pdf | 4
inst/doc/coarsen2.pdf | 4
inst/doc/copyRd.Rout | 3
inst/doc/index.shtml | 36 -
inst/doc/teff.pdf | 4
man/L1.profile.Rd | 2
man/LLvsPSID.Rd |only
man/cemspace.Rd |only
man/imbspace.Rd | 2
man/imbspace.plot.Rd | 12
man/search.match.Rd |only
22 files changed, 1129 insertions(+), 934 deletions(-)
Author: Bendix Carstensen, Martyn Plummer, Esa Laara, Michael Hills et.
al.
Diff between Epi versions 1.1.9 dated 2009-11-22 and 1.1.10 dated 2009-12-24
Maintainer: Bendix Carstensen
Title: A package for statistical analysis in epidemiology.
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data,
including interval censored data and representation of
multistate data. Also some useful functions for tabulation and
plotting. Contains some epidemiological datasets.
Epi-1.1.10/Epi/DESCRIPTION | 10 -
Epi-1.1.10/Epi/R/splitLexis.R | 2
Epi-1.1.10/Epi/inst/doc/Follow-up.pdf | 282 ++++++++++++++++------------------
Epi-1.1.10/Epi/man/occup.Rd | 13 -
Epi-1.1.9/Epi/inst/doc/Rplots.pdf |only
5 files changed, 150 insertions(+), 157 deletions(-)
Author: P. Lafaye de Micheaux
Diff between ConvergenceConcepts versions 0.8 dated 2009-12-23 and 0.9 dated 2009-12-24
More information about ConvergenceConcepts at CRAN
Maintainer: P. Lafaye de Micheaux
Title: Seeing convergence concepts in action
Description: This package provides a way to investigate various modes
of convergence of random variables.
DESCRIPTION | 8 ++++----
R/investigate.R | 6 +++---
inst/CITATION | 4 ++--
inst/HISTORY | 8 +++++++-
4 files changed, 16 insertions(+), 10 deletions(-)
Permanent link
Author: Marc Schwartz Maintainer: Marc Schwartz
Diff between WriteXLS versions 1.8.3 dated 2009-11-06 and 1.8.4 dated 2009-12-23
Title: Cross-platform Perl based R function to create Excel 2003 (XLS)
files
Description: Cross-platform perl based R function to create Excel (XLS)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it
contains or can be specified by the user.
DESCRIPTION | 10 +++++-----
R/WriteXLS.R | 8 ++++----
2 files changed, 9 insertions(+), 9 deletions(-)
Author: Duncan Murdoch/Ming Chen
Maintainer: Duncan Murdoch
Diff between tkrgl versions 0.6.1 dated 2009-01-26 and 0.6.2 dated 2009-12-23
Title: TK widget tools for rgl package
Description: TK widget tools for rgl package
DESCRIPTION | 27 ++++++++++++++++-----------
NAMESPACE |only
2 files changed, 16 insertions(+), 11 deletions(-)
More information about WMBrukerParser at CRAN
Permanent link
Author: Kurt Hornik, David Meyer, Christian Buchta
Maintainer: David Meyer
Diff between slam versions 0.1-7 dated 2009-12-22 and 0.1-8 dated 2009-12-23
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
DESCRIPTION | 8 ++++----
NAMESPACE | 24 ++++++++++++------------
R/array.R | 2 +-
R/stm.R | 48 ++++++++++++++++++++++++------------------------
man/sums.Rd | 40 ++++++++++++++++++++--------------------
tests/stm.R | 26 +++++++++++++-------------
tests/stm_zeros.R | 28 ++++++++++++++--------------
7 files changed, 88 insertions(+), 88 deletions(-)
Author: Kurt Hornik and David Meyer
Maintainer: Kurt Hornik
Diff between relations versions 0.5-4 dated 2009-08-31 and 0.5-5 dated 2009-12-23
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate
functions, and fitters for consensus relations.
relations-0.5-4/relations/R/multiset.R |only
relations-0.5-5/relations/DESCRIPTION | 10
relations-0.5-5/relations/NAMESPACE | 14
relations-0.5-5/relations/NEWS | 16 +
relations-0.5-5/relations/R/algebra.R | 11
relations-0.5-5/relations/R/charfun.R | 3
relations-0.5-5/relations/R/choice.R | 59 +++
relations-0.5-5/relations/R/consensus.R | 100 ++++--
relations-0.5-5/relations/R/container.R | 7
relations-0.5-5/relations/R/data.R | 4
relations-0.5-5/relations/R/dissimilarity.R | 66 +++-
relations-0.5-5/relations/R/domain.R | 29 -
relations-0.5-5/relations/R/dual.R | 33 +-
relations-0.5-5/relations/R/ensemble.R | 24 +
relations-0.5-5/relations/R/getters.R | 16 -
relations-0.5-5/relations/R/graph.R | 37 +-
relations-0.5-5/relations/R/impute.R |only
relations-0.5-5/relations/R/incidence.R | 12
relations-0.5-5/relations/R/lsap.R | 2
relations-0.5-5/relations/R/mip.R | 20 -
relations-0.5-5/relations/R/operators.R | 34 +-
relations-0.5-5/relations/R/pclust.R | 18 -
relations-0.5-5/relations/R/plot.R | 13
relations-0.5-5/relations/R/predicates.R | 354 +++++++++++++++--------
relations-0.5-5/relations/R/ranking.R | 21 -
relations-0.5-5/relations/R/relation.R | 52 +--
relations-0.5-5/relations/R/table.R | 3
relations-0.5-5/relations/R/utilities.R | 21 +
relations-0.5-5/relations/R/violations.R | 173 ++++++-----
relations-0.5-5/relations/inst/NEWS | 16 +
relations-0.5-5/relations/inst/doc/relations.pdf |binary
relations-0.5-5/relations/man/Felines.Rd | 6
relations-0.5-5/relations/man/algebra.Rd | 12
relations-0.5-5/relations/man/choice.Rd | 30 +
relations-0.5-5/relations/man/consensus.Rd | 15
relations-0.5-5/relations/man/dissimilarity.Rd | 28 +
relations-0.5-5/relations/man/impute.Rd |only
relations-0.5-5/relations/man/predicates.Rd | 68 ++--
relations-0.5-5/relations/man/violations.Rd | 6
39 files changed, 868 insertions(+), 465 deletions(-)
Author: John Fox Maintainer: John Fox
Diff between Rcmdr versions 1.5-3 dated 2009-10-05 and 1.5-4 dated 2009-12-23
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical
user interface) for R, based on the tcltk package.
DESCRIPTION | 23
NAMESPACE | 4
R/commander.R | 4
R/statistics-means-menu.R | 5
R/utilities.R | 3075 +++++++++++++++++++++++-----------------------
inst/CHANGES | 12
man/Rcmdr-package.Rd | 4
man/Rcmdr.Utilities.Rd | 7
man/Recode.Rd | 4
man/rcorr.adjust.Rd | 8
man/scatter3d.Rd | 4
11 files changed, 1620 insertions(+), 1530 deletions(-)
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
Diff between ProfessR versions 1.1-0 dated 2009-12-13 and 1.1-1 dated 2009-12-23
Title: Grades Setting and Exam Maker
Description: Programs to determine student grades and create
examinations from Question banks. Programs will create
numerous multiple choice exams, randomly shuffled, for
different versions of same question list.
ProfessR-1.1-0/ProfessR/R/UNCketron.R |only
ProfessR-1.1-1/ProfessR/DESCRIPTION | 6 +--
ProfessR-1.1-1/ProfessR/R/UNCkeytron.R |only
ProfessR-1.1-1/ProfessR/R/droplowest.R |only
ProfessR-1.1-1/ProfessR/R/prep.exam.R | 4 +-
ProfessR-1.1-1/ProfessR/R/repair.id.R | 47 +++++++++++++++---------
ProfessR-1.1-1/ProfessR/inst/doc/ExamMaker.pdf |binary
ProfessR-1.1-1/ProfessR/inst/doc/Grader.pdf |binary
ProfessR-1.1-1/ProfessR/man/DUMPbank.Rd | 4 +-
ProfessR-1.1-1/ProfessR/man/DUMPgrades.Rd | 5 ++
ProfessR-1.1-1/ProfessR/man/ProfessR-package.Rd | 2 -
ProfessR-1.1-1/ProfessR/man/autoemail.Rd | 2 -
ProfessR-1.1-1/ProfessR/man/do.grades.Rd | 7 ++-
ProfessR-1.1-1/ProfessR/man/droplowest.Rd |only
ProfessR-1.1-1/ProfessR/man/make.exam.Rd | 5 ++
ProfessR-1.1-1/ProfessR/man/make.solution.Rd | 4 +-
ProfessR-1.1-1/ProfessR/man/prep.exam.Rd | 14 +++++--
ProfessR-1.1-1/ProfessR/man/seebank.Rd | 6 ++-
ProfessR-1.1-1/ProfessR/man/version.exam.Rd | 13 ++----
19 files changed, 77 insertions(+), 42 deletions(-)
Author: Kengo NAGASHIMA and Yasunori SATO
Maintainer: Kengo NAGASHIMA
Diff between mmcm versions 1.0-1 dated 2009-06-14 and 1.1-0 dated 2009-12-23
Title: Modified Maximum Contrast Method
Description: This package provides an implementation of a modified
maximum contrast method and the maximum contrast method. This
version supports functions mmcm.mvt, mcm.mvt that gives P-value
by using the quasi-Monte Carlo method, and mmcm.resamp that
gives P-value by using the permutation method.
mmcm-1.0-1/mmcm/R/print.mmcm.resamp.R |only
mmcm-1.0-1/mmcm/man/print.mmcm.resamp.Rd |only
mmcm-1.1-0/mmcm/DESCRIPTION | 18 +++---
mmcm-1.1-0/mmcm/NAMESPACE | 4 +
mmcm-1.1-0/mmcm/NEWS | 1
mmcm-1.1-0/mmcm/R/mcm.mvt.R |only
mmcm-1.1-0/mmcm/R/mmcm.mvt.R |only
mmcm-1.1-0/mmcm/R/mmcm.resamp.R | 16 +++---
mmcm-1.1-0/mmcm/R/print.mmcm.res.R |only
mmcm-1.1-0/mmcm/man/mcm.mvt.Rd |only
mmcm-1.1-0/mmcm/man/mmcm.Rd | 21 +++-----
mmcm-1.1-0/mmcm/man/mmcm.mvt.Rd |only
mmcm-1.1-0/mmcm/man/mmcm.resamp.Rd | 81 +++++++++++++++----------------
mmcm-1.1-0/mmcm/man/print.mmcm.res.Rd |only
14 files changed, 71 insertions(+), 70 deletions(-)
Author: Andrew Gelman Maintainer: Yu-Sung Su
Diff between mi versions 0.08-04.07 dated 2009-12-20 and 0.08-05 dated 2009-12-23
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 11 +++--
DESCRIPTION | 8 +--
R/AllInternal.R | 4 -
R/mi.R | 117 +++++++++++++++++++++++--------------------------------
R/mi.completed.R | 21 +++++----
R/mi.polr.R | 14 +++---
man/mi.Rd | 9 ++--
7 files changed, 86 insertions(+), 98 deletions(-)
Author: John Fox, Michael Friendly, and Georges Monette
Maintainer: Michael Friendly
Diff between heplots versions 0.8-10 dated 2009-10-13 and 0.8-11 dated 2009-12-23
Title: Visualizing Tests in Multivariate Linear Models
Description: Functions for visualizing hypothesis tests in multivariate
linear models. They represents sums-of-squares-and-products
matrices for linear hypotheses and for error using ellipses (in
two dimensions) and ellipsoids (in three dimensions).
DESCRIPTION | 17 +++++++++--------
NAMESPACE | 4 ++--
R/heplot1d.R | 7 +++++--
R/mark.H0.R |only
data/WeightLoss.RData |only
demo/OBK.R | 37 +++++++++++++++++++------------------
inst/CHANGES | 8 ++++++++
man/RootStock.Rd | 7 +++++++
man/WeightLoss.Rd |only
man/heplot-package.Rd | 15 ++++++++++-----
man/mark.H0.Rd |only
11 files changed, 60 insertions(+), 35 deletions(-)
Author: Rob J Hyndman Maintainer: Rob J Hyndman
Diff between forecast versions 2.01 dated 2009-09-18 and 2.02 dated 2009-12-23
Title: Forecasting functions for time series
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
ChangeLog | 3 +++
DESCRIPTION | 8 ++++----
R/arima.R | 2 +-
man/ets.Rd | 2 +-
man/forecastplot.Rd | 2 +-
man/gold.Rd | 2 +-
man/logLikets.Rd | 2 +-
man/seasonplot.Rd | 2 +-
man/spline.f.Rd | 2 +-
man/ts.display.Rd | 2 +-
man/wineind.Rd | 2 +-
man/woolyrnq.Rd | 2 +-
12 files changed, 17 insertions(+), 14 deletions(-)
Author: Ian Fellows
Maintainer: Ian Fellows
Diff between Deducer versions 0.2-1 dated 2009-12-02 and 0.2-2 dated 2009-12-23
Title: Deducer
Description: An intuitive, cross-platform graphical data analysis
system. It uses menus and dialogs to guide the user efficiently
through the data manipulation and analysis process, and has an
excel like spreadsheet for easy data frame visualization and
editing. Deducer works best when used with the Java based R GUI
JGR, but the dialogs can be called from the command line.
Dialogs have also been integrated into the Windows Rgui.
DESCRIPTION | 4 +--
NEWS | 6 +++++
R/ggcorplot.R | 43 ++++++++++++++++++--------------------
R/recode.variables.R | 6 ++---
inst/java/deducer.jar |binary
inst/javasrc/deducer/Deducer.java | 2 -
man/ggcorplot.Rd | 21 +++++++++++++++++-
7 files changed, 53 insertions(+), 29 deletions(-)
Author: P. Lafaye de Micheaux Maintainer: P. Lafaye de Micheaux
Diff between ConvergenceConcepts versions 0.6 dated 2009-02-03 and 0.8 dated 2009-12-23
More information about ConvergenceConcepts at CRAN
Title: Seeing convergence concepts in action
Description: This package provides a way to investigate various modes
of convergence of random variables.
DESCRIPTION | 23 ++++++++++++++---------
R/investigate.R | 45 ++++++++++++++++++++++++++++++++++-----------
R/law-plot2d.R | 6 +++---
inst/CITATION | 19 ++++++++++++-------
inst/HISTORY | 14 ++++++++++++++
5 files changed, 77 insertions(+), 30 deletions(-)
Permanent link
Author: Brandon Whitcher
Diff between waveslim versions 1.6.1 dated 2007-10-11 and 1.6.3 dated 2009-12-22
Title: Basic wavelet routines for one-, two- and three-dimensional
signal processing
Description: Basic wavelet routines for time series (1D), image (2D)
and array (3D) analysis. The code provided here is based on
wavelet methodology developed in Percival and Walden (2000);
Gencay, Selcuk and Whitcher (2001); the dual-tree complex
wavelet transform (CWT) from Kingsbury (1999, 2001) as
implemented by Selesnick; and Hilbert wavelet pairs (Selesnick
2001, 2002). All figures in chapters 4-7 of GSW (2001) are
reproducible using this package and R code available at the
book website(s) below.
DESCRIPTION | 38 +++++++++++++++++++--------------
R/cplxdual2D.R |only
man/Andel.Rd | 56 ++++++++++++++++++++++++--------------------------
man/Dualtree.Rd | 16 +++++++-------
man/Farras.Rd | 4 +--
man/Selesnick.Rd | 14 ++++++------
man/cplxdual.Rd |only
man/dualfilt1.Rd | 18 ++++++++--------
man/dwt.3d.Rd | 16 ++++++--------
man/fb.Rd | 31 +++++++++++++++------------
man/hilbert.filter.Rd | 22 ++++++++++++-------
man/hwt.analysis.Rd | 8 +++----
man/modwt.3d.Rd | 19 ++++++++--------
man/mra.3d.Rd | 9 ++++----
man/nile.Rd | 4 +--
man/per.Rd | 13 +++--------
src/dwt.h |only
src/dwt2.c | 1
src/dwt3.c | 1
19 files changed, 140 insertions(+), 130 deletions(-)
Author: David Meyer and Kurt Hornik (with contributions by Christian
Buchta)
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, customizable sets, and intervals.
Diff between sets versions 1.0-1 dated 2009-11-06 and 1.0-2 dated 2009-12-22
DESCRIPTION | 6 - NAMESPACE | 2 R/fuzzylogic.R | 224 ++++++++++++++++++++++++++++++++++++++++++++++++------ R/predicates.R | 14 +++ R/similarity.R | 51 +++++++----- inst/doc/sets.pdf |binary man/cset.Rd | 2 man/fuzzy.Rd | 2 man/gset.Rd | 2 man/similarity.Rd | 14 +-- 10 files changed, 264 insertions(+), 53 deletions(-)
Author: Kurt Hornik, David Meyer, Christian Buchta
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Diff between slam versions 0.1-6 dated 2009-10-21 and 0.1-7 dated 2009-12-22
DESCRIPTION | 8 +-- R/matrix.R | 100 ++++++++++++++++++++++++++----------------------- tests/matrix.R | 1 tests/matrix.Rout.save | 4 + 4 files changed, 63 insertions(+), 50 deletions(-)
Author: David A. James
Title: SQLite interface for R
Description: Database Interface R driver for SQLite. This package
embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the
SQLite engine (version 3.6.21) is included.
Diff between RSQLite versions 0.7-3 dated 2009-10-04 and 0.8-0 dated 2009-12-22
RSQLite-0.7-3/RSQLite/inst/UnitTests/Makefile |only RSQLite-0.7-3/RSQLite/inst/UnitTests/runall.sh |only RSQLite-0.7-3/RSQLite/inst/UnitTests/runalltests.R |only RSQLite-0.7-3/RSQLite/inst/UnitTests/runfile.sh |only RSQLite-0.8-0/RSQLite/DESCRIPTION | 9 RSQLite-0.8-0/RSQLite/NAMESPACE | 4 RSQLite-0.8-0/RSQLite/R/SQLite.R | 107 RSQLite-0.8-0/RSQLite/R/SQLiteSupport.R | 86 RSQLite-0.8-0/RSQLite/R/dbObjectId.R | 4 RSQLite-0.8-0/RSQLite/a.out.dSYM |only RSQLite-0.8-0/RSQLite/inst/NEWS | 227 RSQLite-0.8-0/RSQLite/inst/UnitTests/README |only RSQLite-0.8-0/RSQLite/inst/UnitTests/basic_type_test.R | 2 RSQLite-0.8-0/RSQLite/inst/UnitTests/dbConnect_test.R | 76 RSQLite-0.8-0/RSQLite/inst/UnitTests/dbGetInfo_test.R |only RSQLite-0.8-0/RSQLite/inst/UnitTests/dbWriteTable_test.R | 17 RSQLite-0.8-0/RSQLite/inst/UnitTests/multiple_cons_test.R | 30 RSQLite-0.8-0/RSQLite/inst/UnitTests/sqliteCopyDatabase_test.R |only RSQLite-0.8-0/RSQLite/man/SQLite.Rd | 18 RSQLite-0.8-0/RSQLite/man/dbBuildTableDefinition.Rd | 2 RSQLite-0.8-0/RSQLite/man/dbConnect-methods.Rd | 2 RSQLite-0.8-0/RSQLite/man/dbDriver-methods.Rd | 2 RSQLite-0.8-0/RSQLite/man/dbReadTable-methods.Rd | 2 RSQLite-0.8-0/RSQLite/man/make.db.names-methods.Rd | 4 RSQLite-0.8-0/RSQLite/man/sqliteCopyDatabase.Rd |only RSQLite-0.8-0/RSQLite/man/sqliteSupport.Rd | 68 RSQLite-0.8-0/RSQLite/src/RS-SQLite.c | 155 RSQLite-0.8-0/RSQLite/src/RS-SQLite.h | 21 RSQLite-0.8-0/RSQLite/src/sqlite/sqlite3.c |75198 +++++----- RSQLite-0.8-0/RSQLite/src/sqlite/sqlite3.h | 3696 RSQLite-0.8-0/RSQLite/src/sqlite/sqlite3ext.h | 2 RSQLite-0.8-0/RSQLite/tests/RSQLite_unit_tests.R |only 32 files changed, 45769 insertions(+), 33963 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-29 dated 2009-12-16 and 0.01-30.01 dated 2009-12-22
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
R/as.bugs.array2.R | 2 +-
3 files changed, 9 insertions(+), 5 deletions(-)
Author: Emma Huang and Andrew George
Title: Detection Localization Mapping for QTL
Description:
Diff between dlmap versions 1.0 dated 2008-11-14 and 1.03 dated 2009-12-22
dlmap-1.0/dlmap/R/dlmap.calc.pos.R |only dlmap-1.0/dlmap/R/dlmap.convert.cross.R |only dlmap-1.0/dlmap/R/dlmap.detect.asreml.R |only dlmap-1.0/dlmap/R/dlmap.detect.lme.R |only dlmap-1.0/dlmap/R/dlmap.link.plot.R |only dlmap-1.0/dlmap/R/dlmap.localize.asreml.R |only dlmap-1.0/dlmap/R/dlmap.localize.lme.R |only dlmap-1.0/dlmap/R/dlmap.map.det.asreml.R |only dlmap-1.0/dlmap/R/dlmap.map.det.lme.R |only dlmap-1.0/dlmap/R/dlmap.map.loc.asreml.R |only dlmap-1.0/dlmap/R/dlmap.map.loc.lme.R |only dlmap-1.0/dlmap/R/dlmap.merge.R |only dlmap-1.0/dlmap/R/dlmap.read.R |only dlmap-1.0/dlmap/R/dlmap.test.asreml.R |only dlmap-1.0/dlmap/R/dlmap.test.lme.R |only dlmap-1.0/dlmap/R/link.map.cross.R |only dlmap-1.0/dlmap/data/BSphe1.rda |only dlmap-1.0/dlmap/data/BSphe2.rda |only dlmap-1.0/dlmap/inst/doc/DLvignette-006.eps |only dlmap-1.0/dlmap/inst/doc/DLvignette-006.pdf |only dlmap-1.0/dlmap/inst/doc/DLvignette-015.eps |only dlmap-1.0/dlmap/inst/doc/DLvignette-015.pdf |only dlmap-1.0/dlmap/inst/doc/DLvignette-linkmap.eps |only dlmap-1.0/dlmap/inst/doc/DLvignette-linkmap.pdf |only dlmap-1.0/dlmap/inst/doc/DLvignette.Rnw |only dlmap-1.0/dlmap/inst/doc/DLvignette.dvi |only dlmap-1.0/dlmap/inst/doc/Rplots.pdf |only dlmap-1.0/dlmap/inst/doc/dl.det.log |only dlmap-1.0/dlmap/inst/doc/dl.trace |only dlmap-1.0/dlmap/inst/doc/dlgenin2.dat |only dlmap-1.0/dlmap/inst/doc/dlmapin2.dat |only dlmap-1.0/dlmap/inst/doc/dlphein2.dat |only dlmap-1.0/dlmap/man/BSphe1.Rd |only dlmap-1.0/dlmap/man/BSphe2.Rd |only dlmap-1.0/dlmap/man/dlmap.convert.cross.Rd |only dlmap-1.0/dlmap/man/dlmap.link.plot.Rd |only dlmap-1.0/dlmap/man/pvfx.Rd |only dlmap-1.0/dlmap/man/qchibar.Rd |only dlmap-1.03/dlmap/DESCRIPTION | 26 +- dlmap-1.03/dlmap/NAMESPACE |only dlmap-1.03/dlmap/R/calc.genoprob2.R |only dlmap-1.03/dlmap/R/calc.pos.R |only dlmap-1.03/dlmap/R/cintern.R |only dlmap-1.03/dlmap/R/detect.asreml.R |only dlmap-1.03/dlmap/R/detect.lme.R |only dlmap-1.03/dlmap/R/dlcross.R |only dlmap-1.03/dlmap/R/dlmap.asreml.R | 211 +++++++++++------------- dlmap-1.03/dlmap/R/dlmap.lme.R | 198 ++++++++++------------ dlmap-1.03/dlmap/R/localize.asreml.R |only dlmap-1.03/dlmap/R/localize.lme.R |only dlmap-1.03/dlmap/R/map.det.asreml.R |only dlmap-1.03/dlmap/R/map.det.lme.R |only dlmap-1.03/dlmap/R/map.loc.asreml.R |only dlmap-1.03/dlmap/R/map.loc.lme.R |only dlmap-1.03/dlmap/R/ngen.R |only dlmap-1.03/dlmap/R/ngen.dlcross.R |only dlmap-1.03/dlmap/R/ngen.dlmap.R |only dlmap-1.03/dlmap/R/nmrk.R |only dlmap-1.03/dlmap/R/nmrk.dlcross.R |only dlmap-1.03/dlmap/R/nmrk.dlmap.R |only dlmap-1.03/dlmap/R/nphen.R |only dlmap-1.03/dlmap/R/nphen.dlcross.R |only dlmap-1.03/dlmap/R/nphen.dlmap.R |only dlmap-1.03/dlmap/R/plot.dlcross.R |only dlmap-1.03/dlmap/R/plot.dlmap.R |only dlmap-1.03/dlmap/R/print.dlcross.R |only dlmap-1.03/dlmap/R/print.dlmap.R |only dlmap-1.03/dlmap/R/profileplot.R |only dlmap-1.03/dlmap/R/profileplot.dlmap.R |only dlmap-1.03/dlmap/R/summary.dlcross.R |only dlmap-1.03/dlmap/R/summary.dlmap.R |only dlmap-1.03/dlmap/R/test.asreml.R |only dlmap-1.03/dlmap/R/test.lme.R |only dlmap-1.03/dlmap/R/wald.test.asreml.R |only dlmap-1.03/dlmap/data/BSphe.rda |only dlmap-1.03/dlmap/inst/doc/DLvignette.pdf |binary dlmap-1.03/dlmap/man/BSphe.Rd |only dlmap-1.03/dlmap/man/data.access.Rd |only dlmap-1.03/dlmap/man/dlcross.Rd |only dlmap-1.03/dlmap/man/dlmap-internal.Rd | 58 +++--- dlmap-1.03/dlmap/man/dlmap-package.Rd | 24 +- dlmap-1.03/dlmap/man/dlmap.main.Rd | 55 ++---- dlmap-1.03/dlmap/man/plot.dlcross.Rd |only dlmap-1.03/dlmap/man/plot.dlmap.Rd |only dlmap-1.03/dlmap/man/profileplot.Rd |only dlmap-1.03/dlmap/man/summary.dlcross.Rd |only dlmap-1.03/dlmap/man/summary.dlmap.Rd |only 87 files changed, 269 insertions(+), 303 deletions(-)
Author: R Special Interest Group on Databases (R-SIG-DB)
Title: R Database Interface
Description: A database interface (DBI) definition for communication
between R and relational database management systems. All
classes in this package are virtual and need to be extended by
the various R/DBMS implementations.
Diff between DBI versions 0.2-4 dated 2007-10-17 and 0.2-5 dated 2009-12-22
DESCRIPTION | 18 R/DBI.R | 6 R/Util.R | 21 inst/NEWS | 11 inst/doc/DBI.Rnw | 2 inst/doc/DBI.pdf | 3594 +++++++++++++++++++++++---------------------- man/DBIConnection-class.Rd | 2 man/DBIDriver-class.Rd | 2 man/DBIObject-class.Rd | 2 man/DBIResult-class.Rd | 2 man/dbCallProc.Rd | 2 man/dbCommit.Rd | 2 man/dbConnect.Rd | 2 man/dbDataType.Rd | 2 man/dbDriver.Rd | 2 man/dbGetInfo.Rd | 4 man/dbListTables.Rd | 2 man/dbReadTable.Rd | 2 man/dbSendQuery.Rd | 2 man/dbSetDataMappings.Rd | 2 man/fetch.Rd | 2 man/make.db.names.Rd | 2 man/print.list.pairs.Rd | 2 23 files changed, 1909 insertions(+), 1779 deletions(-)
Author: Pierre Lefeuvre
Title: a Bunch of Structure and Sequence Analysis
Description: Sort sequence from genbank. Retrieve sequence information
from genbank (designed for viruses sequences and retrieve
information such as isolation dates and host). Detect group of
sequences presenting phylogeography signal. Read PDB file
(protein 3D structure file).
Diff between BoSSA versions 1.0 dated 2009-12-11 and 1.1 dated 2009-12-22
DESCRIPTION | 8 ++-- NAMESPACE | 3 + R/InfoGB.R | 102 +++++++++++++---------------------------------------- R/InfoGenBank.R | 8 ++-- R/grpPhylogeo.R | 17 +++----- man/InfoGenBank.Rd | 8 +++- man/distGPS.Rd |only man/grpPhylogeo.Rd | 6 ++- 8 files changed, 52 insertions(+), 100 deletions(-)
Author: Nicolas Turenne
Diff between svcR versions 1.6.2 dated 2009-09-12 and 1.6.3 dated 2009-12-21
Title: svcR package
Description: svcR implements a support vector machine technique for
clustering It includes choice between three kinds of kernel.
Original cluster labeling and export of clusters. Format of
data require 3 files: matrix, attributes, variables.
svcR-1.6.2/svcR/data/term_att.txt |only
svcR-1.6.2/svcR/data/term_mat.txt |only
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svcR-1.6.3/svcR/DESCRIPTION | 8 ++--
svcR-1.6.3/svcR/NAMESPACE | 5 +-
svcR-1.6.3/svcR/R/display.R | 29 ++++++++--------
svcR-1.6.3/svcR/R/eval.R | 14 +++----
svcR-1.6.3/svcR/R/kern.R | 2 -
svcR-1.6.3/svcR/R/svcR.R | 64 ++++++++++++++++--------------------
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svcR-1.6.3/svcR/man/Display.Rd | 10 ++---
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21 files changed, 68 insertions(+), 86 deletions(-)
Author: Terry Therneau, original R port by Thomas Lumley
Title: Survival analysis, including penalised likelihood.
Description: survival analysis: descriptive statistics, two-sample
tests, parametric accelerated failure models, Cox model.
Delayed entry (truncation) allowed for all models; interval
censoring for parametric models. Case-cohort designs.
Diff between survival versions 2.35-7 dated 2009-09-09 and 2.35-8 dated 2009-12-21
survival-2.35-7/survival/Notes |only survival-2.35-7/survival/tests/r_standord.R |only survival-2.35-7/survival/tests/r_standord.Rout.save |only survival-2.35-8/survival/Changelog | 36 + survival-2.35-8/survival/DESCRIPTION | 8 survival-2.35-8/survival/R/aareg.taper.S | 2 survival-2.35-8/survival/R/agexact.fit.S | 2 survival-2.35-8/survival/R/agreg.fit.S | 2 survival-2.35-8/survival/R/basehaz.S | 2 survival-2.35-8/survival/R/cluster.S | 2 survival-2.35-8/survival/R/coxpenal.df.S | 2 survival-2.35-8/survival/R/coxph.S | 7 survival-2.35-8/survival/R/coxph.fit.S | 2 survival-2.35-8/survival/R/coxph.rvar.S | 2 survival-2.35-8/survival/R/coxph.wtest.S | 2 survival-2.35-8/survival/R/dsurvreg.S | 2 survival-2.35-8/survival/R/frailty.S | 2 survival-2.35-8/survival/R/frailty.brent.S | 2 survival-2.35-8/survival/R/frailty.controlaic.S | 2 survival-2.35-8/survival/R/frailty.controldf.S | 6 survival-2.35-8/survival/R/frailty.controlgam.S | 2 survival-2.35-8/survival/R/frailty.controlgauss.S | 2 survival-2.35-8/survival/R/frailty.gamma.S | 4 survival-2.35-8/survival/R/frailty.gammacon.S | 2 survival-2.35-8/survival/R/frailty.gaussian.S | 5 survival-2.35-8/survival/R/frailty.t.S | 4 survival-2.35-8/survival/R/is.na.coxph.penalty.S | 2 survival-2.35-8/survival/R/labels.survreg.S | 2 survival-2.35-8/survival/R/lines.aareg.S | 2 survival-2.35-8/survival/R/lines.survfit.coxph.S | 2 survival-2.35-8/survival/R/model.matrix.coxph.R | 12 survival-2.35-8/survival/R/plot.aareg.S | 2 survival-2.35-8/survival/R/plot.survfit.S | 6 survival-2.35-8/survival/R/points.survfit.S | 2 survival-2.35-8/survival/R/predict.coxph.S | 18 survival-2.35-8/survival/R/predict.survreg.penal.S | 2 survival-2.35-8/survival/R/print.cox.zph.S | 2 survival-2.35-8/survival/R/print.coxph.S | 2 survival-2.35-8/survival/R/print.coxph.null.S | 2 survival-2.35-8/survival/R/print.coxph.penal.S | 2 survival-2.35-8/survival/R/print.ratetable.S | 2 survival-2.35-8/survival/R/print.summary.survfit.S | 2 survival-2.35-8/survival/R/print.summary.survreg.S | 2 survival-2.35-8/survival/R/print.survdiff.S | 2 survival-2.35-8/survival/R/print.survexp.S | 2 survival-2.35-8/survival/R/print.survreg.S | 2 survival-2.35-8/survival/R/print.survreg.penal.S | 2 survival-2.35-8/survival/R/residuals.survreg.S | 352 +++++++++---------- survival-2.35-8/survival/R/residuals.survreg.penal.S | 2 survival-2.35-8/survival/R/ridge.S | 2 survival-2.35-8/survival/R/strata.S | 2 survival-2.35-8/survival/R/summary.ratetable.S | 2 survival-2.35-8/survival/R/summary.survreg.S | 2 survival-2.35-8/survival/R/survdiff.S | 2 survival-2.35-8/survival/R/survdiff.fit.S | 2 survival-2.35-8/survival/R/survexp.cfit.S | 2 survival-2.35-8/survival/R/survfitCI.S | 4 survival-2.35-8/survival/R/survreg.S | 17 survival-2.35-8/survival/R/survreg.old.S | 2 survival-2.35-8/survival/R/tcut.S | 2 survival-2.35-8/survival/R/untangle.specials.S | 2 survival-2.35-8/survival/data/survexp.mn.R | 11 survival-2.35-8/survival/inst |only survival-2.35-8/survival/man/anova.coxph.Rd | 7 survival-2.35-8/survival/man/survreg.Rd | 11 survival-2.35-8/survival/src/agexact.c | 2 survival-2.35-8/survival/src/agscore.c | 2 survival-2.35-8/survival/src/agsurv1.c | 2 survival-2.35-8/survival/src/agsurv2.c | 2 survival-2.35-8/survival/src/chinv3.c | 2 survival-2.35-8/survival/src/cholesky3.c | 2 survival-2.35-8/survival/src/chsolve2.c | 4 survival-2.35-8/survival/src/chsolve3.c | 2 survival-2.35-8/survival/src/coxfit2.c | 2 survival-2.35-8/survival/src/coxmart.c | 2 survival-2.35-8/survival/src/coxph_wtest.c | 2 survival-2.35-8/survival/src/coxscho.c | 3 survival-2.35-8/survival/src/pyears2.c | 2 survival-2.35-8/survival/src/pystep.c | 2 survival-2.35-8/survival/src/survConcordance.c | 2 survival-2.35-8/survival/src/survdiff2.c | 2 survival-2.35-8/survival/src/survfit4.c | 2 survival-2.35-8/survival/src/survreg6.c | 3 survival-2.35-8/survival/tests/book1.Rout.save | 34 + survival-2.35-8/survival/tests/book2.Rout.save | 34 + survival-2.35-8/survival/tests/book3.Rout.save | 49 +- survival-2.35-8/survival/tests/book4.Rout.save | 49 +- survival-2.35-8/survival/tests/factor2.Rout.save | 13 survival-2.35-8/survival/tests/r_stanford.R |only survival-2.35-8/survival/tests/r_stanford.Rout.save |only survival-2.35-8/survival/tests/survreg2.R |only 91 files changed, 481 insertions(+), 336 deletions(-)
Author: Hemant Ishwaran
Diff between randomSurvivalForest versions 3.5.1 dated 2008-09-05 and 3.6.0 dated 2009-12-21
More information about randomSurvivalForest at CRAN
Title: Ishwaran and Kogalur's Random Survival Forest
Description: Ensemble survival analysis based on a random forest of
trees using random inputs.
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randomSurvivalForest-3.6.0/randomSurvivalForest/R/plot.variable.R | 186
randomSurvivalForest-3.6.0/randomSurvivalForest/R/pmml2rsf.R | 141
randomSurvivalForest-3.6.0/randomSurvivalForest/R/predict.rsf.R | 433 +-
randomSurvivalForest-3.6.0/randomSurvivalForest/R/print.rsf.R | 195
randomSurvivalForest-3.6.0/randomSurvivalForest/R/randomSurvivalForest.R | 141
randomSurvivalForest-3.6.0/randomSurvivalForest/R/rsf.R | 141
randomSurvivalForest-3.6.0/randomSurvivalForest/R/rsf.default.R | 540 +-
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randomSurvivalForest-3.6.0/randomSurvivalForest/R/rsf.news.R | 141
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randomSurvivalForest-3.6.0/randomSurvivalForest/man/plot.variable.Rd | 49
randomSurvivalForest-3.6.0/randomSurvivalForest/man/pmml2rsf.Rd | 6
randomSurvivalForest-3.6.0/randomSurvivalForest/man/predict.rsf.Rd | 151
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randomSurvivalForest-3.6.0/randomSurvivalForest/src/global.h | 218 -
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randomSurvivalForest-3.6.0/randomSurvivalForest/src/rsf.c | 1146 ++---
randomSurvivalForest-3.6.0/randomSurvivalForest/src/rsf.h | 154
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randomSurvivalForest-3.6.0/randomSurvivalForest/src/rsfSplit.c | 1090 ++++-
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randomSurvivalForest-3.6.0/randomSurvivalForest/src/rsfStack.c | 1115 ++++-
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randomSurvivalForest-3.6.0/randomSurvivalForest/src/trace.c |only
randomSurvivalForest-3.6.0/randomSurvivalForest/src/trace.h |only
99 files changed, 9657 insertions(+), 5579 deletions(-)
Permanent link
Author: Guido Schwarzer
Diff between meta versions 1.1-4 dated 2009-11-04 and 1.1-5 dated 2009-12-21
Title: Meta-Analysis with R
Description: Fixed and random effects meta-analysis. Functions for
tests of bias, forest and funnel plot.
ChangeLog | 6 ++++++
DESCRIPTION | 8 ++++----
R/forest.R | 18 ++++++++++--------
man/forest.Rd | 4 +++-
4 files changed, 23 insertions(+), 13 deletions(-)
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Michael Friendly, Patrick
Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick
Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen,
Andrew Niccolai, Tom Short and Ben Stabler
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Diff between maptools versions 0.7-28 dated 2009-12-03 and 0.7-29 dated 2009-12-21
ChangeLog | 17 ++++++++++++++- DESCRIPTION | 10 ++++----- INDEX | 1 NAMESPACE | 3 ++ R/CCmaps.R |only inst/ChangeLog | 17 ++++++++++++++- inst/share/gshhs_c.b |binary inst/share/wdb_borders_c.b |binary man/CCmaps.Rd |only man/Rgshhs.Rd | 11 ++-------- man/spRbind-methods.Rd | 17 +++++++++++++++ src/Rgshhs.c | 29 +++++++++++++++++++++----- src/Rgshhs.h | 49 +++++++++++++++++++++++++++++++++------------ 13 files changed, 121 insertions(+), 33 deletions(-)
Author: Roger Bivand
Diff between classInt versions 0.1-13 dated 2009-10-20 and 0.1-14 dated 2009-12-21
Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for
mapping or other graphics purposes
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
R/classInt.R | 12 ++++++++++++
inst/ChangeLog | 9 +++++++++
man/classIntervals.Rd | 8 +++++---
5 files changed, 39 insertions(+), 7 deletions(-)
Author: Aniko Szabo, Lisa Pappas
Title: Estimating oncogenetic trees
Description: Contains functions to construct and evaluate directed tree
structures that model the process of occurrence of genetic
alterations during carcinogenesis.
Diff between Oncotree versions 0.3 dated 2009-03-12 and 0.3.1 dated 2009-12-21
DESCRIPTION | 10 ++++++---- inst/doc/Oncotree_vignette.pdf |binary man/oncotree.fit.Rd | 6 +++--- 3 files changed, 9 insertions(+), 7 deletions(-)
Author: John R. Wallace
Diff between Imap versions 1.0 dated 2009-12-18 and 1.01 dated 2009-12-21
Title: Interactive Mapping
Description: Zoom in and out of maps or any supplied lines or points,
with control for color, poly fill, and aspect.
DESCRIPTION | 8 ++++----
man/IMAP-package.Rd | 6 +++---
man/imap.Rd | 6 +++---
man/imap.ll.Rd | 7 +++++--
man/select.pts.Rd | 6 +++---
5 files changed, 18 insertions(+), 15 deletions(-)
Author: Uwe Ligges
Diff between tuneR versions 0.2-12 dated 2009-11-19 and 0.2-13 dated 2009-12-21
Title: Analysis of music
Description: Collection of tools to analyze music, handling wave files,
transcription, ...
DESCRIPTION | 8 ++++----
man/WaveIO.Rd | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Author: Martin Kober
Title: String Kernel Methods for kernlab
Description: Gapped and word-based string kernels for use with kernlab
Diff between stringkernels versions 0.8.7 dated 2009-09-23 and 0.8.8 dated 2009-12-21
DESCRIPTION | 8 ++++---- NAMESPACE | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Author: Justin Donaldson
Title: A simple toolbar GUI for brushing RGL plots
Description: sculpt3d is a GTK+ toolbar that allows for more
interactive control of a dataset inside the RGL plot window.
Controls for simple brushing, highlighting, labeling, and
mouseMode changes are provided by point-and-click rather than
through the R terminal interface.
Diff between sculpt3d versions 0.2-1 dated 2009-08-27 and 0.2-2 dated 2009-12-21
DESCRIPTION | 8 ++++---- NEWS | 2 ++ R/sculpt3d-internal.R | 22 ++++++---------------- 3 files changed, 12 insertions(+), 20 deletions(-)
Author: Torsten Hothorn, Frank Bretz and Peter Westfall and Richard M.
Heiberger and Andre Schuetzenmeister
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general
linear hypotheses in parametric models, including linear,
generalized linear, linear mixed effects, and survival models.
Diff between multcomp versions 1.1-2 dated 2009-09-10 and 1.1-3 dated 2009-12-21
multcomp-1.1-2/multcomp/inst/doc/chfls1.bbl |only multcomp-1.1-2/multcomp/inst/doc/chfls1.blg |only multcomp-1.1-3/multcomp/DESCRIPTION | 13 multcomp-1.1-3/multcomp/NEWS | 12 multcomp-1.1-3/multcomp/R/cld.R | 2 multcomp-1.1-3/multcomp/R/helpers.R | 88 multcomp-1.1-3/multcomp/R/mcp.R | 5 multcomp-1.1-3/multcomp/R/print.R | 13 multcomp-1.1-3/multcomp/data/sbp.R |only multcomp-1.1-3/multcomp/inst/CHANGES | 12 multcomp-1.1-3/multcomp/inst/doc/chfls1.pdf |binary multcomp-1.1-3/multcomp/inst/doc/generalsiminf.pdf | 1642 +++++------ multcomp-1.1-3/multcomp/inst/doc/multcomp-examples.pdf |binary multcomp-1.1-3/multcomp/man/glht.Rd | 2 multcomp-1.1-3/multcomp/man/sbp.Rd |only multcomp-1.1-3/multcomp/man/trees513.Rd | 6 multcomp-1.1-3/multcomp/tests/Examples/multcomp-Ex.Rout.save | 81 multcomp-1.1-3/multcomp/tests/bugfix.R | 19 multcomp-1.1-3/multcomp/tests/bugfix.Rout.save | 27 multcomp-1.1-3/multcomp/tests/codetools-checks.Rout.save | 2 multcomp-1.1-3/multcomp/tests/regtest-Tukey.Rout.save | 2 multcomp-1.1-3/multcomp/tests/regtest-anova.Rout.save |only multcomp-1.1-3/multcomp/tests/regtest-interface.Rout.save | 2 multcomp-1.1-3/multcomp/tests/regtest-lme.Rout.save |only 24 files changed, 1031 insertions(+), 897 deletions(-)
Author: Adelino Ferreira da Silva
Diff between cudaBayesreg versions 0.1-1 dated 2009-10-19 and 0.2-1 dated 2009-12-21
Title: CUDA Parallel Implementation of a Bayesian Multilevel Model for
fMRI Data Analysis
Description: Compute Unified Device Architecture (CUDA) is a software
platform for massively parallel high-performance computing on
NVIDIA GPUs. This package provides a CUDA implementation of a
Bayesian multilevel model for the analysis of brain fMRI data.
A fMRI data set consists of time series of volume data in 4D
space. Typically, volumes are collected as slices of 64 x 64
"voxels". Analysis of fMRI data often relies on fitting linear
regression models at each voxel of the brain. The volume of the
data to be processed, and the type of statistical analysis to
perform in fMRI analysis, call for high-performance computing
strategies. In this package, the CUDA programming model uses a
separate thread for fitting a linear regression model at each
voxel in parallel. The global statistical model implements a
Gibbs Sampler for hierarchical linear models with a normal
prior. This model has been proposed by Rossi, Allenby and
McCulloch in "Bayesian Statistics and Marketing", Chapter 3,
and is referred to as "rhierLinearModel" in the R-package
"bayesm". A notebook equipped with a NVIDIA "GeForce 8400M GS"
card having Compute Capability 1.1 has been used in the tests.
cudaBayesreg-0.1-1/cudaBayesreg/data/niislicets.Rdata |only
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cudaBayesreg-0.2-1/cudaBayesreg/R/plot.hcoef.post.R | 2
cudaBayesreg-0.2-1/cudaBayesreg/R/post.ppm.R | 11 -
cudaBayesreg-0.2-1/cudaBayesreg/R/post.tseries.R | 2
cudaBayesreg-0.2-1/cudaBayesreg/R/regpostsim.R | 2
cudaBayesreg-0.2-1/cudaBayesreg/README |only
cudaBayesreg-0.2-1/cudaBayesreg/README.html | 27 +--
cudaBayesreg-0.2-1/cudaBayesreg/configure.ac | 2
cudaBayesreg-0.2-1/cudaBayesreg/data/design.txt | 90 ++++++------
cudaBayesreg-0.2-1/cudaBayesreg/data/filtered_func_data.nii |binary
cudaBayesreg-0.2-1/cudaBayesreg/data/mask.nii |binary
cudaBayesreg-0.2-1/cudaBayesreg/man/cudaMultireg.slice.Rd | 2
cudaBayesreg-0.2-1/cudaBayesreg/src/Makefile | 2
cudaBayesreg-0.2-1/cudaBayesreg/src/Makefile.in | 2
cudaBayesreg-0.2-1/cudaBayesreg/src/cudaMultireg.cu | 85 ++++++-----
cudaBayesreg-0.2-1/cudaBayesreg/src/cudaMultiregKnr.cu | 10 -
cudaBayesreg-0.2-1/cudaBayesreg/src/d_rngNR.cu | 23 ++-
cudaBayesreg-0.2-1/cudaBayesreg/src/mycudamath.cu | 17 +-
cudaBayesreg-0.2-1/cudaBayesreg/src/newmat.h |only
cudaBayesreg-0.2-1/cudaBayesreg/src/newmat11/newmat.h | 4
21 files changed, 159 insertions(+), 136 deletions(-)
Author: Dirk Eddelbuettel
Title: C++ classes to embed R in C++ applications
Description: C++ classes to embed R in C++ applications The RInside
packages makes it easier to have 'R inside' your C++
application by providing a few wrapper classes.
As R itself is embedded into your application, a shared library build
of R is required. This works on Linux, OS X and even on Windows
provided you use the same tools used to build R itself.
Several examples are provided in the examples/ directory of the
installed package, and Doxygen-generated documentation of the
C++ classes is included as well.
Diff between RInside versions 0.1.1 dated 2009-09-28 and 0.2.0 dated 2009-12-21
DESCRIPTION | 15 inst/ChangeLog | 41 inst/THANKS | 1 inst/doc/html/MemBuf_8cpp.html | 6 inst/doc/html/MemBuf_8cpp_source.html | 2 inst/doc/html/MemBuf_8h.html | 2 inst/doc/html/MemBuf_8h_source.html | 2 inst/doc/html/RInsideAutoloads_8h.html |only inst/doc/html/RInsideAutoloads_8h__dep__incl.map |only inst/doc/html/RInsideAutoloads_8h__dep__incl.md5 |only inst/doc/html/RInsideAutoloads_8h__dep__incl.png |only inst/doc/html/RInsideAutoloads_8h_source.html |only inst/doc/html/RInsideEnvVars_8h.html |only inst/doc/html/RInsideEnvVars_8h__dep__incl.map |only inst/doc/html/RInsideEnvVars_8h__dep__incl.md5 |only inst/doc/html/RInsideEnvVars_8h__dep__incl.png |only inst/doc/html/RInsideEnvVars_8h_source.html |only inst/doc/html/RInside_8cpp.html | 12 inst/doc/html/RInside_8cpp__incl.map | 2 inst/doc/html/RInside_8cpp__incl.md5 | 2 inst/doc/html/RInside_8cpp__incl.png |binary inst/doc/html/RInside_8cpp_source.html | 614 +++++----- inst/doc/html/RInside_8h.html | 76 + inst/doc/html/RInside_8h_source.html | 71 - inst/doc/html/annotated.html | 2 inst/doc/html/classMemBuf-members.html | 2 inst/doc/html/classMemBuf.html | 8 inst/doc/html/classRInside-members.html | 2 inst/doc/html/classRInside.html | 69 - inst/doc/html/classRInside_ae045f7e3d8b0881e2af8cdfb5c5fc118_cgraph.map |only inst/doc/html/classRInside_ae045f7e3d8b0881e2af8cdfb5c5fc118_cgraph.md5 |only inst/doc/html/classRInside_ae045f7e3d8b0881e2af8cdfb5c5fc118_cgraph.png |only inst/doc/html/classRInside_aeecbfd63737539d1731b2f38852b3751_cgraph.map | 1 inst/doc/html/classRInside_aeecbfd63737539d1731b2f38852b3751_cgraph.md5 | 2 inst/doc/html/classRInside_aeecbfd63737539d1731b2f38852b3751_cgraph.png |binary inst/doc/html/classes.html | 2 inst/doc/html/files.html | 5 inst/doc/html/functions.html | 2 inst/doc/html/functions_func.html | 2 inst/doc/html/functions_type.html | 2 inst/doc/html/functions_vars.html | 2 inst/doc/html/globals.html | 27 inst/doc/html/globals_defs.html | 6 inst/doc/html/globals_func.html |only inst/doc/html/globals_vars.html | 18 inst/doc/html/graph_legend.html | 2 inst/doc/html/main.html | 2 inst/doc/html/setenv_8c.html |only inst/doc/html/setenv_8c__incl.map |only inst/doc/html/setenv_8c__incl.md5 |only inst/doc/html/setenv_8c__incl.png |only inst/doc/html/setenv_8c_source.html |only inst/doc/html/structMemBuf_1_1membuf__st-members.html | 2 inst/doc/html/structMemBuf_1_1membuf__st.html | 2 inst/doc/html/tree.html | 5 inst/doc/latex/MemBuf_8cpp__incl.pdf |binary inst/doc/latex/MemBuf_8h__dep__incl.pdf | 213 +-- inst/doc/latex/RInsideAutoloads_8h.tex |only inst/doc/latex/RInsideAutoloads_8h__dep__incl.eps |only inst/doc/latex/RInsideAutoloads_8h__dep__incl.md5 |only inst/doc/latex/RInsideAutoloads_8h__dep__incl.pdf |only inst/doc/latex/RInsideEnvVars_8h.tex |only inst/doc/latex/RInsideEnvVars_8h__dep__incl.eps |only inst/doc/latex/RInsideEnvVars_8h__dep__incl.md5 |only inst/doc/latex/RInsideEnvVars_8h__dep__incl.pdf |only inst/doc/latex/RInside_8cpp__incl.eps | 14 inst/doc/latex/RInside_8cpp__incl.md5 | 2 inst/doc/latex/RInside_8cpp__incl.pdf |binary inst/doc/latex/RInside_8h.tex | 30 inst/doc/latex/RInside_8h__dep__incl.pdf | 179 +- inst/doc/latex/RInside_8h__incl.pdf |binary inst/doc/latex/classMemBuf__coll__graph.pdf | 210 +-- inst/doc/latex/classMemBuf_a98a5b5de27fb73dd3433773b825faf21_cgraph.pdf |binary inst/doc/latex/classRInside.tex | 53 inst/doc/latex/classRInside__coll__graph.pdf |binary inst/doc/latex/classRInside_a4cf10e78fb73bfda699f921c28e6b985_cgraph.pdf | 223 +-- inst/doc/latex/classRInside_a9f18dc5011e1e32a52360b3d88f9bab7_cgraph.pdf |binary inst/doc/latex/classRInside_ae045f7e3d8b0881e2af8cdfb5c5fc118_cgraph.eps |only inst/doc/latex/classRInside_ae045f7e3d8b0881e2af8cdfb5c5fc118_cgraph.md5 |only inst/doc/latex/classRInside_ae045f7e3d8b0881e2af8cdfb5c5fc118_cgraph.pdf |only inst/doc/latex/classRInside_aeecbfd63737539d1731b2f38852b3751_cgraph.eps | 152 +- inst/doc/latex/classRInside_aeecbfd63737539d1731b2f38852b3751_cgraph.md5 | 2 inst/doc/latex/classRInside_aeecbfd63737539d1731b2f38852b3751_cgraph.pdf |binary inst/doc/latex/doxygen.sty | 4 inst/doc/latex/files.tex | 3 inst/doc/latex/refman.tex | 5 inst/doc/latex/setenv_8c.tex |only inst/doc/latex/setenv_8c__incl.eps |only inst/doc/latex/setenv_8c__incl.md5 |only inst/doc/latex/setenv_8c__incl.pdf |only inst/doc/man/man3/MemBuf.3 | 2 inst/doc/man/man3/MemBuf.cpp.3 | 2 inst/doc/man/man3/MemBuf.h.3 | 2 inst/doc/man/man3/MemBuf_membuf_st.3 | 2 inst/doc/man/man3/RInside.3 | 42 inst/doc/man/man3/RInside.cpp.3 | 2 inst/doc/man/man3/RInside.h.3 | 24 inst/doc/man/man3/RInsideAutoloads.h.3 |only inst/doc/man/man3/RInsideEnvVars.h.3 |only inst/doc/man/man3/setenv.c.3 |only inst/examples/Makefile | 3 inst/examples/Makefile.win |only inst/examples/rinside_sample4.cpp |only inst/examples/rinside_sample5.cpp |only src/Makefile.win |only src/RInside.cpp | 25 src/RInside.h | 11 src/setenv.c |only src/tools/RInsideEnvVars.r | 3 109 files changed, 1319 insertions(+), 900 deletions(-)
Author: William Revelle
Diff between psych versions 1.0-83 dated 2009-10-26 and 1.0-85 dated 2009-12-20
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. Graphical displays
of path diagrams, factor analysis and structural equation
models are created using basic graphics. Some of the functions
are written to support a book on psychometrics as well as
publications in personality research. For more information, see
the personality-project.org/r webpage.
psych-1.0-83/psych/R/dia.rect.R |only
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psych-1.0-83/psych/R/panel.cor.R |only
psych-1.0-83/psych/R/panel.cor.scale.R |only
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psych-1.0-83/psych/sort.rowcol.R |only
psych-1.0-85/psych/CHANGES | 221
psych-1.0-85/psych/DESCRIPTION | 16
psych-1.0-85/psych/NAMESPACE | 5
psych-1.0-85/psych/R/ICLUST.diagram.R | 2
psych-1.0-85/psych/R/cluster2keys.R | 12
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psych-1.0-85/psych/R/fa.R | 111
psych-1.0-85/psych/R/fa.diagram.R | 26
psych-1.0-85/psych/R/fa.graph.R | 1
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psych-1.0-85/psych/R/factor.stats.R | 39
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psych-1.0-85/psych/R/make.structural.R | 5
psych-1.0-85/psych/R/mat.regress.R | 8
psych-1.0-85/psych/R/pairs.panels.R | 151
psych-1.0-85/psych/R/principal.R | 2
psych-1.0-85/psych/R/print.psych.R | 30
psych-1.0-85/psych/R/print.psych.fa.R | 34
psych-1.0-85/psych/R/print.psych.vss.R | 2
psych-1.0-85/psych/R/sim.structural.R | 27
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psych-1.0-85/psych/inst/doc/overview.Rnw | 140
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psych-1.0-85/psych/man/00.psych-package.Rd | 22
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psych-1.0-85/psych/man/galton.Rd | 6
psych-1.0-85/psych/man/mat.regress.Rd | 4
psych-1.0-85/psych/man/omega.graph.Rd | 4
psych-1.0-85/psych/man/pairs.panels.Rd | 18
psych-1.0-85/psych/man/peas.Rd | 6
psych-1.0-85/psych/man/sim.Rd | 28
psych-1.0-85/psych/man/sim.structural.Rd | 8
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57 files changed, 28009 insertions(+), 20534 deletions(-)
Author: Jarrod Hadfield
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models
Diff between MCMCglmm versions 1.13 dated 2009-11-12 and 2.00 dated 2009-12-20
DESCRIPTION | 8 NAMESPACE | 3 R/MCMCglmm.R | 154 R/buildZ.R | 73 R/find.components.R | 7 R/rIW.R | 2 R/rtnorm.R |only inst/CITATION | 16 inst/doc/CourseNotes.Rnw |only inst/doc/CourseNotes.pdf |only inst/doc/Figures/TEST.R | 44 inst/doc/JarLib.bib |19833 ++++++++++++++++++++++++++++++- inst/doc/Lecture1-002.pdf |only inst/doc/Lecture1-004.pdf |only inst/doc/Lecture1-005.pdf |only inst/doc/Lecture1-006.pdf |only inst/doc/Lecture1-007.pdf |only inst/doc/Lecture1-008.pdf |only inst/doc/Lecture1-009.pdf |only inst/doc/Lecture1-011.pdf |only inst/doc/Lecture1-012.pdf |only inst/doc/Lecture1-015.pdf |only inst/doc/Lecture1-016.pdf |only inst/doc/Lecture1-017.pdf |only inst/doc/Lecture1-018.pdf |only inst/doc/Lecture1-019.pdf |only inst/doc/Lecture1-020.pdf |only inst/doc/Lecture1-021.pdf |only inst/doc/Lecture1-022.pdf |only inst/doc/Lecture1-023.pdf |only inst/doc/Lecture1-024.pdf |only inst/doc/Lecture1-025.pdf |only inst/doc/Lecture1-026.pdf |only inst/doc/Lecture1-027.pdf |only 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src/lpzF.h |only src/rIW.cc | 2 src/rtnorm.c | 63 src/rtnormR.cc |only src/rtnormR.h |only 388 files changed, 21142 insertions(+), 849 deletions(-)
Author: Mee Young Park, Trevor Hastie
Title: L2 penalized logistic regression with a stepwise variable
selection
Description: L2 penalized logistic regression for both continuous and
discrete predictors, with forward stagewise/forward stepwise
variable selection procedure.
Diff between stepPlr versions 0.91 dated 2007-01-30 and 0.92 dated 2009-12-20
stepPlr-0.91/stepPlr/src/mi02lib.f |only stepPlr-0.91/stepPlr/src/mi05funs.f |only stepPlr-0.91/stepPlr/src/mi10unix.f |only stepPlr-0.91/stepPlr/src/mi11sys.f |only stepPlr-0.91/stepPlr/src/mi12solv.f |only stepPlr-0.91/stepPlr/src/mi15blas.f |only stepPlr-0.91/stepPlr/src/mi17util.f |only stepPlr-0.91/stepPlr/src/mi20amat.f |only stepPlr-0.91/stepPlr/src/mi21amat.f |only stepPlr-0.91/stepPlr/src/mi25bfac.f |only stepPlr-0.91/stepPlr/src/mi26bfac.f |only stepPlr-0.91/stepPlr/src/mi27lu.f |only stepPlr-0.91/stepPlr/src/mi30spec.f |only stepPlr-0.91/stepPlr/src/mi35mps.f |only stepPlr-0.91/stepPlr/src/mi36mps.f |only stepPlr-0.91/stepPlr/src/mi40bfil.f |only stepPlr-0.91/stepPlr/src/mi50lp.f |only stepPlr-0.91/stepPlr/src/mi60srch.f |only stepPlr-0.91/stepPlr/src/mi65rmod.f |only stepPlr-0.91/stepPlr/src/mi70nobj.f |only stepPlr-0.91/stepPlr/src/mi80ncon.f |only stepPlr-0.91/stepPlr/src/mi81ncon.f |only stepPlr-0.91/stepPlr/src/plr.f |only stepPlr-0.92/stepPlr/DESCRIPTION | 26 + stepPlr-0.92/stepPlr/R/internal.R | 73 ++--- stepPlr-0.92/stepPlr/R/plr.R | 185 ++++++++---- stepPlr-0.92/stepPlr/R/step.plr.R | 400 +++++++++++++++++----------- stepPlr-0.92/stepPlr/man/cv.step.plr.Rd | 14 stepPlr-0.92/stepPlr/man/plr-internal.Rd | 18 - stepPlr-0.92/stepPlr/man/plr.Rd | 32 +- stepPlr-0.92/stepPlr/man/predict.plr.Rd | 12 stepPlr-0.92/stepPlr/man/predict.stepplr.Rd | 14 stepPlr-0.92/stepPlr/man/step.plr.Rd | 43 +-- stepPlr-0.92/stepPlr/src/cg_descent.f |only stepPlr-0.92/stepPlr/src/solveplr.f |only 35 files changed, 484 insertions(+), 333 deletions(-)
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: sos
Description: R related Search Engines
Diff between sos versions 1.2-2 dated 2009-12-14 and 1.2-4 dated 2009-12-20
DESCRIPTION | 8 ++++---- R/findFn.R | 19 +++++++++++++++++++ R/writeFindFn2xls.R | 21 +++++++++++---------- inst/doc/sos.pdf |binary 4 files changed, 34 insertions(+), 14 deletions(-)
Author: Martin Maechler and many others.
Title: Utilities from Seminar fuer Statistik ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik
ETH Zurich, many ported from S-plus times.
Diff between sfsmisc versions 1.0-9 dated 2009-11-18 and 1.0-10 dated 2009-12-20
ChangeLog | 15 +++++++++++++++ DESCRIPTION | 8 ++++---- R/ps.goodies.R | 10 +++++----- inst/ChangeLog | 15 +++++++++++++++ man/mat2tex.Rd | 4 ++-- man/ps.end.Rd | 5 +++-- man/ps.latex.Rd | 12 ++++++++++-- 7 files changed, 54 insertions(+), 15 deletions(-)
Author: Russell V. Lenth
Title: Response-surface analysis
Description: Provides functions to generate response-surface designs,
fit first- and second-order response-surface models, make
surface plots, obtain the path of steepest ascent, and do
canonical analysis.
Diff between rsm versions 1.30 dated 2009-12-18 and 1.31 dated 2009-12-20
DESCRIPTION | 8 R/contour-lm.R | 1 inst/NEWS | 5 inst/doc/rsm-plots.pdf | 617 +++++++++++++++++++++++-------------------------- inst/doc/rsm.pdf |binary 5 files changed, 311 insertions(+), 320 deletions(-)
Author: Jeff D. Hamann
Diff between rconifers versions 0.0-10 dated 2009-04-14 and 1.0.0 dated 2009-12-20
Title: R interface to the CONIFERS forest growth model
Description: This package contains functions for simulating future
forest conditions using the CONIFERS growth model.
rconifers-0.0-10/rconifers/data/plants.txt |only
rconifers-0.0-10/rconifers/data/plots.txt |only
rconifers-0.0-10/rconifers/man/calc_max_sdi.Rd |only
rconifers-0.0-10/rconifers/man/plants.Rd |only
rconifers-0.0-10/rconifers/man/plots.Rd |only
rconifers-1.0.0/rconifers/CITATION |only
rconifers-1.0.0/rconifers/DESCRIPTION | 8
rconifers-1.0.0/rconifers/INDEX | 49 +++--
rconifers-1.0.0/rconifers/R/rconifers.r | 113 +++++++++--
rconifers-1.0.0/rconifers/data/plants.smc.txt |only
rconifers-1.0.0/rconifers/data/plants.swo.txt |only
rconifers-1.0.0/rconifers/data/plots.smc.txt |only
rconifers-1.0.0/rconifers/data/plots.swo.txt |only
rconifers-1.0.0/rconifers/man/calc.max.sdi.Rd |only
rconifers-1.0.0/rconifers/man/impute.Rd | 98 +---------
rconifers-1.0.0/rconifers/man/plants.smc.Rd |only
rconifers-1.0.0/rconifers/man/plants.swo.Rd |only
rconifers-1.0.0/rconifers/man/plots.smc.Rd |only
rconifers-1.0.0/rconifers/man/plots.swo.Rd |only
rconifers-1.0.0/rconifers/man/print.sample.data.Rd | 132 +------------
rconifers-1.0.0/rconifers/man/project.Rd | 111 ++---------
rconifers-1.0.0/rconifers/man/rand_seed.Rd | 21 --
rconifers-1.0.0/rconifers/man/rconifers-internal.Rd | 3
rconifers-1.0.0/rconifers/man/rconifers.Rd | 86 ++------
rconifers-1.0.0/rconifers/man/sample.data.Rd | 115 +----------
rconifers-1.0.0/rconifers/man/set.species.map.Rd | 134 +------------
rconifers-1.0.0/rconifers/man/set.variant.Rd | 109 -----------
rconifers-1.0.0/rconifers/man/smc.Rd | 117 +-----------
rconifers-1.0.0/rconifers/man/sp.sums.Rd | 131 ++++++-------
rconifers-1.0.0/rconifers/man/summary.sample.data.Rd | 105 +---------
rconifers-1.0.0/rconifers/man/swo.Rd | 110 +----------
rconifers-1.0.0/rconifers/man/thin.Rd | 89 ++-------
rconifers-1.0.0/rconifers/src/conifers.h | 8
rconifers-1.0.0/rconifers/src/grow.c | 32 +--
rconifers-1.0.0/rconifers/src/rconifers.c | 184 +++++++++++++------
35 files changed, 539 insertions(+), 1216 deletions(-)
Author: Han Lin Shang and Rob J Hyndman
Title: Rainbow plots, bagplots and boxplots for functional data
Description: Functions and datasets for functional data display and
outlier detection.
Diff between rainbow versions 1.6 dated 2009-11-09 and 1.7 dated 2009-12-20
CHANGELOG | 6 ++++ DESCRIPTION | 10 ++++---- R/SVDplot.R | 2 + R/fts.R | 36 ++++++++++++++--------------- R/sfts.R | 60 ++++++++++++++++++++++++++----------------------- man/ElNino.Rd | 2 - man/Simulationdata.Rd | 2 - man/fboxplot.Rd | 2 - man/foutliers.Rd | 2 - man/lines.fds.Rd | 2 - man/plot.fdepth.Rd | 2 - man/plot.fds.Rd | 2 - man/points.fds.Rd | 2 - man/rainbow-package.Rd | 2 - 14 files changed, 72 insertions(+), 60 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.08-04.06 dated 2009-12-09 and 0.08-04.07 dated 2009-12-20
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
DESCRIPTION | 10 +++++-----
NAMESPACE | 4 ++++
R/mi.binary.R | 4 ++--
R/mi.continuous.R | 4 ++--
R/mi.count.R | 4 ++--
5 files changed, 15 insertions(+), 11 deletions(-)
Author: Ulrike Groemping
Title: Inequality constrained inference in linear normal situations
Description: This package implements parameter estimation in normal
(linear) models under linear equality and inequality
constraints and implements normal likelihood ratio tests
involving inequality-constrained hypotheses. For
inequality-constrained linear models, averaging over R-squared
for different orderings of regressors is also included.
Diff between ic.infer versions 1.1 dated 2009-11-22 and 1.1-1 dated 2009-12-20
ic.infer-1.1-1/ic.infer/DESCRIPTION | 6 +++--- ic.infer-1.1-1/ic.infer/inst/NEWS | 5 +++++ ic.infer-1.1/ic.infer/LICENSE |only 3 files changed, 8 insertions(+), 3 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-56 dated 2009-12-16 and 0.0-57 dated 2009-12-20
ChangeLog | 14 ++++++++++++++ DESCRIPTION | 6 +++--- NEWS | 8 ++++++-- R/gbutton.R | 18 ++++++++++++++++++ R/gdroplist.R | 2 +- R/ggrid.R | 14 +++++++++++--- man/gWidgetsRGtk2-undocumented.Rd | 2 ++ 7 files changed, 55 insertions(+), 9 deletions(-)
Author: Rob J Hyndman and Han Lin Shang
Title: Functional time series analysis
Description: Functions for functional time series
Diff between ftsa versions 1.2 dated 2009-12-09 and 1.3 dated 2009-12-20
CHANGELOG | 8 ++++++-- DESCRIPTION | 8 ++++---- NAMESPACE | 3 ++- R/dynupdateweightselect.R |only man/dynupdateweightselect.Rd |only man/fbootstrap.Rd | 2 +- man/ftsa-package.Rd | 2 +- 7 files changed, 14 insertions(+), 9 deletions(-)
Author: Sebastien Beland (UQAM), David Magis (U Liège) and Gilles
Raiche (UQAM)
Title: Collection of methods to detect dichotomous differential item
functioning (DIF) in psychometrics
Description: The difR package contains several traditional methods to
detect DIF in dichotomously scored items. Both uniform and
non-uniform DIF effects can be detected, with methods relying
upon item response models or not. Some methods deal with more
than one focal group.
Diff between difR versions 1.1 dated 2009-10-28 and 2.0 dated 2009-12-20
DESCRIPTION | 14 - NEWS | 108 +++++++++++-- R/Logistik.r | 74 +++++---- R/dichoDif.r | 10 - R/difGMH.r | 2 R/difGenLogistic.R |only R/difGenLord.r | 88 ++++++++-- R/difLogistic.r | 384 +++++++++++++++++++++++++++++++---------------- R/difLord.r | 74 +++++++-- R/difMH.r | 41 ++++- R/difStd.r | 25 ++- R/genDichoDif.R |only R/genLogistik.R |only R/mantelHaenszel.r | 10 - R/selectDif.r | 6 R/selectGenDif.R |only inst |only man/LRT.Rd | 26 +-- man/Logistik.rd | 77 +++++++-- man/LordChi2.rd | 50 +++--- man/RajuZ.rd | 50 +++--- man/breslowDay.rd | 23 +- man/contrastMatrix.rd | 20 +- man/dichoDif.rd | 54 +++--- man/difBD.rd | 39 ++-- man/difGMH.rd | 55 +++--- man/difGenLogistic.rd |only man/difGenLord.rd | 154 ++++++++++-------- man/difLRT.rd | 36 ++-- man/difLogistic.rd | 99 +++++++++--- man/difLord.rd | 136 +++++++++------- man/difMH.rd | 15 + man/difRaju.rd | 115 ++++++-------- man/difStd.rd | 46 +++-- man/genDichoDif.rd |only man/genLogistik.rd |only man/genLordChi2.rd | 69 ++++---- man/genMantelHaenszel.rd | 39 ++-- man/itemPar1PL.rd | 18 +- man/itemPar2PL.rd | 12 - man/itemPar3PL.rd | 12 - man/itemPar3PLconst.rd | 18 +- man/itemParEst.rd | 28 +-- man/itemRescale.rd | 58 +++---- man/mantelHaenszel.rd | 18 +- man/selectDif.rd | 44 +++-- man/selectGenDif.rd |only man/stdPDIF.rd | 16 + man/verbal.rd | 2 49 files changed, 1384 insertions(+), 781 deletions(-)
Author: Dirk Eddelbuettel with contributions by Simon Urbanek and David
Reiss; based on code written during 2005 and 2006 by Dominick
Samperi
Title: Rcpp R/C++ interface package
Description: R/C++ interface classes and examples The Rcpp library maps
data types betweeen R and C++, and includes support for R types
real, integer, character, vector, matrix, Date, datetime (i.e.
POSIXct) at microsecond resolution, data frame, and function.
Transer to and from simple SEXP objects is particular easy.
Calling R functions from C++ is also supported.
C++ code can be 'inlined' and a helper function (from the 'inline'
package) will create a C++ function and compile, link and load
it which makes C++ integration easy.
Several examples are included.
Diff between Rcpp versions 0.6.8 dated 2009-11-10 and 0.7.0 dated 2009-12-20
Rcpp-0.6.8/Rcpp/R/RcppVersion.R |only Rcpp-0.6.8/Rcpp/inst/LICENSE-Rcpp.txt |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp.html |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp__incl.map |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp__incl.md5 |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp__incl.png |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp_a62c075d47528a48e5fb57c1855c4d71c_cgraph.map |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp_a62c075d47528a48e5fb57c1855c4d71c_cgraph.md5 |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp_a62c075d47528a48e5fb57c1855c4d71c_cgraph.png |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp_add881a27c2b8e36897a59bca1d04585f_cgraph.map |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp_add881a27c2b8e36897a59bca1d04585f_cgraph.md5 |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp_add881a27c2b8e36897a59bca1d04585f_cgraph.png |only Rcpp-0.6.8/Rcpp/inst/doc/html/Rcpp_8cpp_source.html |only Rcpp-0.6.8/Rcpp/inst/doc/html/classColDatum_a4376ad852efcf177fad6f168a8f44877_cgraph.map |only 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Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppList.cpp.3 | 4 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppList.h.3 | 32 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppMatrix.3 | 50 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppMatrix.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppMatrix.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppMatrixView.3 | 32 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppMatrixView.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppMatrixView.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppNumList.3 | 34 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppNumList.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppNumList.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppParams.3 | 28 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppParams.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppParams.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppResultSet.3 | 78 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppResultSet.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppResultSet.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppSexp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppSexp.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppSexp.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppStringVector.3 | 34 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppStringVector.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppStringVector.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppStringVectorView.3 | 24 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppStringVectorView.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppStringVectorView.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppVector.3 | 44 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppVector.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppVector.h.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppVectorView.3 | 16 Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppVectorView.cpp.3 |only Rcpp-0.7.0/Rcpp/inst/doc/man/man3/RcppVectorView.h.3 |only Rcpp-0.7.0/Rcpp/inst/examples/RcppInline |only Rcpp-0.7.0/Rcpp/man/Rcpp-package.Rd | 3 Rcpp-0.7.0/Rcpp/man/RcppInline.Rd |only Rcpp-0.7.0/Rcpp/man/RcppParams.Rd | 10 Rcpp-0.7.0/Rcpp/man/internals.Rd |only Rcpp-0.7.0/Rcpp/src/Rcpp.h | 466 -- Rcpp-0.7.0/Rcpp/src/RcppCommon.cpp |only Rcpp-0.7.0/Rcpp/src/RcppCommon.h | 29 Rcpp-0.7.0/Rcpp/src/RcppDate.cpp | 47 Rcpp-0.7.0/Rcpp/src/RcppDate.h | 29 Rcpp-0.7.0/Rcpp/src/RcppDateVector.cpp |only Rcpp-0.7.0/Rcpp/src/RcppDateVector.h |only Rcpp-0.7.0/Rcpp/src/RcppDatetime.cpp | 65 Rcpp-0.7.0/Rcpp/src/RcppDatetime.h | 23 Rcpp-0.7.0/Rcpp/src/RcppDatetimeVector.cpp |only Rcpp-0.7.0/Rcpp/src/RcppDatetimeVector.h |only Rcpp-0.7.0/Rcpp/src/RcppExample.cpp | 23 Rcpp-0.7.0/Rcpp/src/RcppFrame.cpp |only Rcpp-0.7.0/Rcpp/src/RcppFrame.h |only Rcpp-0.7.0/Rcpp/src/RcppFunction.cpp |only Rcpp-0.7.0/Rcpp/src/RcppFunction.h |only Rcpp-0.7.0/Rcpp/src/RcppList.cpp | 23 Rcpp-0.7.0/Rcpp/src/RcppList.h | 23 Rcpp-0.7.0/Rcpp/src/RcppMatrix.cpp |only Rcpp-0.7.0/Rcpp/src/RcppMatrix.h |only Rcpp-0.7.0/Rcpp/src/RcppMatrixView.cpp |only Rcpp-0.7.0/Rcpp/src/RcppMatrixView.h |only Rcpp-0.7.0/Rcpp/src/RcppNumList.cpp |only Rcpp-0.7.0/Rcpp/src/RcppNumList.h |only Rcpp-0.7.0/Rcpp/src/RcppParams.cpp | 23 Rcpp-0.7.0/Rcpp/src/RcppParams.h | 33 Rcpp-0.7.0/Rcpp/src/RcppResultSet.cpp |only Rcpp-0.7.0/Rcpp/src/RcppResultSet.h |only Rcpp-0.7.0/Rcpp/src/RcppSexp.cpp |only Rcpp-0.7.0/Rcpp/src/RcppSexp.h |only Rcpp-0.7.0/Rcpp/src/RcppStringVector.cpp |only Rcpp-0.7.0/Rcpp/src/RcppStringVector.h |only Rcpp-0.7.0/Rcpp/src/RcppStringVectorView.cpp |only Rcpp-0.7.0/Rcpp/src/RcppStringVectorView.h |only Rcpp-0.7.0/Rcpp/src/RcppVector.cpp |only Rcpp-0.7.0/Rcpp/src/RcppVector.h |only Rcpp-0.7.0/Rcpp/src/RcppVectorView.cpp |only Rcpp-0.7.0/Rcpp/src/RcppVectorView.h |only 825 files changed, 8312 insertions(+), 6823 deletions(-)
Author: Ulrike Groemping
Title: R Commander Plugin for (industrial) Design of Experiments
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Diff between RcmdrPlugin.DoE versions 0.6-8 dated 2009-12-10 and 0.6-9 dated 2009-12-20
DESCRIPTION | 8 ++++---- R/Menu.EffectPlots.R | 10 +++++++++- R/Menu.IAPlot.R | 10 +++++++++- R/Menu.model.R | 40 +++++++++++++--------------------------- inst/NEWS | 6 ++++++ inst/etc/menus.txt | 2 +- man/Menu.Analyze.Rd | 2 +- man/Menu.EffectsPlots.Rd | 1 + man/Menu.IAPlot.Rd | 9 ++++++--- man/Menu.model.Rd | 6 ++++-- 10 files changed, 54 insertions(+), 40 deletions(-)
More information about RcmdrPlugin.DoE at CRAN
Permanent link
Author: Mark J. Fielding
Diff between MCMChybridGP versions 2.1 dated 2009-09-22 and 2.2 dated 2009-12-20
Title: Hybrid Markov chain Monte Carlo using Gaussian Processes
Description: Hybrid Markov chain Monte Carlo (MCMC) to simulate from a
multimodal target distribution. A Gaussian process
approximation makes this possible when derivatives are unknown.
The Package serves to minimize the number of function
evaluations in Bayesian calibration of computer models using
parallel tempering. It allows replacement of the true target
distribution in high temperature chains, or complete
replacement of the target. Methods used are described in,
"Efficient MCMC schemes for Bayesian calibration of computer
models", Fielding, Mark, Nott, David J. and Liong Shie-Yui
(2009), in preparation. The authors gratefully acknowledge the
support & contributions of the Singapore-Delft Water Alliance
(SDWA). The research presented in this work was carried out as
part of the SDWA's Multi-Objective Multi-Reservoir Management
research programme (R-264-001-272).
MCMChybridGP-2.1/MCMChybridGP/LICENSE |only
MCMChybridGP-2.2/MCMChybridGP/DESCRIPTION | 8 --
MCMChybridGP-2.2/MCMChybridGP/NAMESPACE | 27 ++++----
MCMChybridGP-2.2/MCMChybridGP/R/MCMChybridGP-internal.R | 6 -
MCMChybridGP-2.2/MCMChybridGP/R/hybrid.explore.R | 19 ++---
MCMChybridGP-2.2/MCMChybridGP/R/hybrid.sample.R | 45 ++++++--------
MCMChybridGP-2.2/MCMChybridGP/man/MCMChybridGP-package.Rd | 2
MCMChybridGP-2.2/MCMChybridGP/man/generateX0.Rd | 2
MCMChybridGP-2.2/MCMChybridGP/man/hybrid.explore.Rd | 6 +
MCMChybridGP-2.2/MCMChybridGP/man/hybrid.sample.Rd | 34 +++++++---
10 files changed, 76 insertions(+), 73 deletions(-)
Author: Yves Tillé
Diff between sampling versions 2.2 dated 2009-07-18 and 2.3 dated 2009-12-18
Title: Survey Sampling
Description: Functions for drawing and calibrating samples.
DESCRIPTION | 8 -
R/UPsampfordpi2.r |only
R/calibev.r | 7 +
R/varest.r |only
R/vartaylor_ratio.r |only
inst/doc/Rplots.pdf | 217 +++++++++++++++++++++++------------------------
inst/doc/UPexamples.pdf |binary
inst/doc/calibration.Snw | 89 ++++++++++++++++++-
inst/doc/calibration.pdf |binary
man/UPbrewer.Rd | 1
man/UPsampford.Rd | 2
man/UPsampfordpi2.Rd |only
man/calib.Rd | 3
man/calibev.Rd | 2
man/varest.Rd |only
man/vartaylor_ratio.Rd |only
16 files changed, 210 insertions(+), 119 deletions(-)
Author: Jerome Friedman, Trevor Hastie, Rob Tibshirani
Title: Lasso and elastic-net regularized generalized linear models
Description: Extremely efficient procedures for fitting the entire
lasso or elastic-net regularization path for linear regression,
logistic and multinomial regression models. The algorithm uses
cyclical coordinate descent in a pathwise fashion, as described
in the paper on the maintainer's website.
Diff between glmnet versions 1.1-3 dated 2009-01-24 and 1.1-4 dated 2009-12-18
glmnet-1.1-3/glmnet/INDEX |only glmnet-1.1-4/glmnet/DESCRIPTION | 18 ++++++++++++------ glmnet-1.1-4/glmnet/NAMESPACE | 15 +++++++++++++-- glmnet-1.1-4/glmnet/R/cv.glmnet.R |only glmnet-1.1-4/glmnet/R/cvelnet.R |only glmnet-1.1-4/glmnet/R/cvlognet.R |only glmnet-1.1-4/glmnet/R/error.bars.R |only glmnet-1.1-4/glmnet/R/getmin.R |only glmnet-1.1-4/glmnet/R/plot.cv.glmnet.R |only glmnet-1.1-4/glmnet/R/predict.lognet.R | 2 +- glmnet-1.1-4/glmnet/man/cv.glmnet.Rd |only glmnet-1.1-4/glmnet/man/glmnet-internal.Rd | 4 ++++ glmnet-1.1-4/glmnet/man/plot.cv.glmnet.Rd |only glmnet-1.1-4/glmnet/man/plot.glmnet.Rd | 2 -- glmnet-1.1-4/glmnet/man/predict.glmnet.Rd | 2 -- 15 files changed, 30 insertions(+), 13 deletions(-)
Author: Karline Soetaert
Diff between ReacTran versions 1.1 dated 2009-07-21 and 1.2 dated 2009-12-18
Title: Reactive transport modelling in 1D, 2D and 3D
Description: Routines for developing models that describe reaction and
advective-diffusive transport in one, two or three dimensions.
Includes transport routines in porous media, in estuaries, and
in bodies with variable shape.
DESCRIPTION | 10
R/properties.R | 2
R/setup.grid.1D.R | 55 ++
R/setup.prop.2D.R | 20 -
R/tran.3D.R | 29 -
inst/doc/ReacTran.pdf | 973 +++++++++++++++++++++++++-------------------------
man/ReacTran.Rd | 10
man/fiadeiro.Rd | 13
man/properties.Rd | 11
man/setup.grid.1D.Rd | 34 -
man/tran.1D.Rd | 24 -
11 files changed, 613 insertions(+), 568 deletions(-)
Author: Roger Bivand
Diff between spdep versions 0.4-54 dated 2009-11-26 and 0.4-56 dated 2009-12-18
Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
ChangeLog | 38 ++
DESCRIPTION | 18
NAMESPACE | 22 -
R/impacts.R | 331 ++++++++++-------
R/kpgm_new.R | 33 +
R/s2sls.R | 584 +++++++++++++++----------------
R/summary.spsarlm.R | 36 +
inst/ChangeLog | 38 ++
inst/doc/CO69.pdf |binary
inst/doc/sids.pdf | 960 +++++++++++++++++++++++++--------------------------
man/GMerrorsar.Rd | 29 +
man/LR.sarlm.Rd | 13
man/errorsarlm.Rd | 8
man/impacts.sarlm.Rd | 78 ++--
man/lagsarlm.Rd | 2
man/stsls.Rd | 137 +++----
man/summary.sarlm.Rd | 6
17 files changed, 1290 insertions(+), 1043 deletions(-)
Author: Russell V. Lenth
Title: Response-surface analysis
Description: Provides functions to generate response-surface designs,
fit first- and second-order response-surface models, make
surface plots, obtain the path of steepest ascent, and do
canonical analysis.
Diff between rsm versions 1.21 dated 2009-10-30 and 1.30 dated 2009-12-18
rsm-1.21/rsm/inst/doc/rsm.Rnw |only rsm-1.21/rsm/inst/doc/rsm.bbl |only rsm-1.21/rsm/inst/doc/rsm.blg |only rsm-1.30/rsm/DESCRIPTION | 10 +- rsm-1.30/rsm/R/coding.R | 9 + rsm-1.30/rsm/R/contour-lm.R | 165 +++++++++++++++++++++++++++++++---- rsm-1.30/rsm/R/rsm.R | 17 +++ rsm-1.30/rsm/inst/NEWS | 20 ++++ rsm-1.30/rsm/inst/doc/rsm-plots.Rtex |only rsm-1.30/rsm/inst/doc/rsm-plots.pdf |only rsm-1.30/rsm/inst/doc/rsm.Rtex |only rsm-1.30/rsm/inst/doc/rsm.bib | 8 - rsm-1.30/rsm/inst/doc/rsm.pdf |binary rsm-1.30/rsm/man/ChemReact.Rd | 5 - rsm-1.30/rsm/man/bbd.Rd | 4 rsm-1.30/rsm/man/ccd.Rd | 4 rsm-1.30/rsm/man/ccd.pick.Rd | 4 rsm-1.30/rsm/man/coded.data.Rd | 14 ++ rsm-1.30/rsm/man/contour.lm.Rd | 110 +++++++++++++++++++++-- rsm-1.30/rsm/man/rsm-package.Rd | 14 +- rsm-1.30/rsm/man/rsm.Rd | 13 +- 21 files changed, 343 insertions(+), 54 deletions(-)
Author: Frederic Ibanez
Diff between pastecs versions 1.3-10 dated 2009-10-19 and 1.3-11 dated 2009-12-18
Title: Package for Analysis of Space-Time Ecological Series
Description: Regulation, decomposition and analysis of space-time
series. The pastecs library is a PNEC-Art4 and IFREMER (Benoit
Beliaeff
DESCRIPTION | 8 ++++----
R/pgleissberg.R | 2 +-
R/plot.turnogram.R | 7 +++++--
3 files changed, 10 insertions(+), 7 deletions(-)
Author: Hinda Haned
Diff between forensim versions 1.1-2 dated 2009-11-11 and 1.1-3 dated 2009-12-18
Title: Statistical tools for the interpretation of forensic DNA
mixtures
Description: Statistical methods and simulation tools for the
interpretation of forensic DNA mixtures
DESCRIPTION | 10 +++++-----
R/LR.R | 4 ++--
R/N2Exact.R |only
R/N2error.R |only
R/Pevid2.R | 33 +++++++++++++--------------------
R/likelihood.R | 4 ++--
R/zzz.R | 2 +-
man/N2Exact.Rd |only
man/N2error.Rd |only
man/Pevid2.Rd | 8 ++++++--
man/comb.Rd | 2 +-
man/dataL.Rd | 4 ++--
man/lik.Rd | 5 ++---
man/lik.loc.Rd | 4 ++--
man/likestim.Rd | 4 ++--
man/likestim.loc.Rd | 4 ++--
16 files changed, 40 insertions(+), 44 deletions(-)
More information about SampleSizeMeans at CRAN
Permanent link
Author: Adrian Baddeley
Diff between spatstat versions 1.17-2 dated 2009-11-10 and 1.17-4 dated 2009-12-17
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns. Contains functions
for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Point process models can be fitted to point
pattern data. Cluster type models are fitted by the method of
minimum contrast. Very general Gibbs point process models can
be fitted to point pattern data using a function ppm similar to
lm or glm. Models may include dependence on covariates,
interpoint interaction and dependence on marks. Fitted models
can be simulated automatically. Also provides facilities for
formal inference (such as chi-squared tests) and model
diagnostics (including simulation envelopes, residuals,
residual plots and Q-Q plots).
DESCRIPTION | 28 +-
INDEX | 9
R/First.R | 8
R/Kinhom.S | 4
R/Kmulti.inhom.R | 6
R/blur.R | 19 +
R/density.ppp.R | 4
R/edgeTrans.R | 5
R/images.R | 59 +++-
R/kmrs.S | 20 -
R/markcorr.R | 31 +-
R/mpl.R | 57 +++-
R/options.R | 11
R/pcf.R | 85 +++---
R/pcfcross.R | 30 ++
R/pcfinhom.R |only
R/pcfmulti.inhom.R |only
R/plot.fasp.R | 4
R/plot.owin.S | 9
R/plot.ppp.S | 16 -
R/ppmclass.R | 31 +-
R/predict.ppm.S | 56 +++-
R/quadratcount.R | 15 -
R/quadscheme.S | 15 -
R/resid4plot.R | 4
R/rmh.ppm.R | 13
R/summary.ppm.R | 98 +++----
R/tess.R | 74 ++++-
R/util.S | 41 +-
demo/spatstat.R | 16 +
inst/doc/shapefiles.pdf | 670 +++++++++++++++++++++++-------------------------
man/Kinhom.Rd | 6
man/anova.ppm.Rd | 33 ++
man/as.ppp.Rd | 16 -
man/integral.im.Rd |only
man/internal.Rd | 24 +
man/markcorr.Rd | 2
man/pcf.Rd | 7
man/pcfcross.Rd | 8
man/pcfcross.inhom.Rd |only
man/pcfdot.Rd |only
man/pcfdot.inhom.Rd |only
man/pcfinhom.Rd |only
man/plot.owin.Rd | 9
man/spatstat-package.Rd | 14 -
man/tess.Rd | 15 -
man/whist.Rd |only
src/sftcr.c | 24 -
48 files changed, 997 insertions(+), 599 deletions(-)
Author: Karline Soetaert
Diff between rootSolve versions 1.4 dated 2009-06-29 and 1.5 dated 2009-12-17
Title: Nonlinear root finding, equilibrium and steady-state analysis of
ordinary differential equations
Description: Routines to find the root of nonlinear functions, and to
perform steady-state and equilibrium analysis of ordinary
differential equations (ODE). Includes routines that: (1)
generate gradient and Jacobian matrices (full and banded), (2)
find roots of non-linear equations by the Newton-Raphson
method, (3) estimate steady-state conditions of a system of
(differential) equations in full, banded or sparse form, using
the Newton-Raphson method, or by dynamically running, (4) solve
the steady-state conditions for uni-and multicomponent 1-D,
2-D, and 3-D partial differential equations, that have been
converted to ODEs by numerical differencing (using the
method-of-lines approach). Includes fortran code.
DESCRIPTION | 10
NAMESPACE | 4
R/Utilities.R |only
R/steady.1D.R | 7
R/steady.2D.R | 4
R/steady.3D.R | 4
R/stode.R | 15
R/stodes.R | 11
inst/CITATION | 10
inst/doc/rootSolve.Rnw | 8
inst/doc/rootSolve.pdf |82640 ++++++++-----------------------------------------
man/gradient.Rd | 25
man/hessian.Rd | 4
man/jacobian.band.Rd | 16
man/jacobian.full.Rd | 29
man/multiroot.1D.Rd | 38
man/multiroot.Rd | 19
man/plot.steady.Rd |only
man/rootSolve.Rd | 8
man/runsteady.Rd | 5
man/steady.1D.Rd | 75
man/steady.2D.Rd | 13
man/steady.3D.Rd | 6
man/steady.Rd | 7
man/steady.band.Rd | 22
man/stode.Rd | 19
man/stodes.Rd | 10
man/uniroot.all.Rd | 13
src/call_runsteady.c | 86
src/call_steady.c | 100
src/call_stsparse.c | 67
src/steady.h | 17
src/steady_utils.c | 84
33 files changed, 14650 insertions(+), 68726 deletions(-)
Author: Graham Williams
Diff between rattle versions 2.5.11 dated 2009-12-07 and 2.5.12 dated 2009-12-17
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
DESCRIPTION | 8
NAMESPACE | 1
R/cluster.R | 15
R/data.R | 26
R/evaluate.R | 22
R/explore.R | 1808 ++++++++++++++++++++++++++++++++++++++++++++------
R/hclust.R | 4
R/help.R | 8
R/kmeans.R | 48 +
R/nnet.R | 41 +
R/projects.R | 11
R/rattle.R | 9
R/survival.R | 41 -
inst/etc/rattle.glade | 21
man/internal.Rd | 1
15 files changed, 1790 insertions(+), 274 deletions(-)
Author: L. Andries van der Ark
Diff between mokken versions 2.0 dated 2009-07-31 and 2.1 dated 2009-12-17
Title: Mokken Scale Analysis in R
Description: mokken contains functions for performing Mokken scale
analysis on test and questionnaire data. It includes an
automated item selection algorithm, and various checks of model
assumptions.
DESCRIPTION | 8 -
NAMESPACE | 3
R/check.iio.R | 357 ++++++++++++++++++++++++++++++++++++-----------
R/check.reliability.R | 1
R/summary.iio.class.R |only
data/cavalini.rda |only
inst/CITATION | 10 -
man/acl.Rd | 16 +-
man/cavalini.Rd |only
man/check.iio.Rd | 83 ++++++++--
man/check.restscore.Rd | 11 +
man/mokken-package.Rd | 34 +++-
man/summary.iio.class.Rd |only
13 files changed, 406 insertions(+), 117 deletions(-)
Author: Cedric Gouy-Pailler
Diff between jointDiag versions 0.1-2 dated 2009-04-28 and 0.2 dated 2009-12-17
Title: Joint Approximate Diagonalization of a set of square matrices
Description: Different algorithms to perform approximate joint
diagonalization of a finite set of square matrices. Depending
on the algorithm, orthogonal or non-orthogonal diagonalizer is
found. These algorithms are particularly useful in the context
of blind source separation.
DESCRIPTION | 8 ++++----
man/ajd.Rd | 7 ++++---
man/ffdiag.Rd | 2 +-
man/jadiag.Rd | 3 ++-
man/jedi.Rd | 5 +++--
man/qdiag.Rd | 3 ++-
man/uwedge.Rd | 3 ++-
7 files changed, 18 insertions(+), 13 deletions(-)
Author: Max Kuhn
Title: Desirabiliy Function Optimization and Ranking
Description: S3 classes for multivariate optimization using the
desirability function by Derringer and Suich (1980)
Diff between desirability versions 1.02 dated 2009-01-26 and 1.03 dated 2009-12-17
DESCRIPTION | 13 R/predict.R | 4 inst/NEWS |only inst/doc/desirability.pdf | 610 ++++++++++++++++++++++------------------------ 4 files changed, 313 insertions(+), 314 deletions(-)
Author: Karline Soetaert
Diff between deSolve versions 1.5-1 dated 2009-11-23 and 1.6 dated 2009-12-17
Title: General solvers for initial value problems of ordinary
differential equations (ODE), partial differential equations
(PDE) and differential algebraic equations (DAE)
Description: Functions that solve initial value problems of a system of
first-order ordinary differential equations (ODE), of partial
differential equations (PDE) and of differential algebraic
equations (DAE). The functions provide an interface to the
FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK
collection, to the FORTRAN functions dvode and daspk and a
C-implementation of solvers of the Runge-Kutta family with
fixed or variable time steps. The package contains routines
designed for solving ODEs resulting from 1-D, 2-D and 3-D
partial differential equations (PDE) that have been converted
to ODEs by numerical differencing.
DESCRIPTION | 8
NAMESPACE | 1
R/Utilities.R | 256 +
R/daspk.R | 4
R/diagnostics.R | 4
R/forcings.R | 116
R/functions.R | 17
R/lsoda.R | 28
R/lsodar.R | 28
R/lsode.R | 26
R/lsodes.R | 30
R/rk.R | 49
R/rkMethod.R | 25
R/vode.R | 27
inst/doc/comp-event.pdf |only
inst/doc/compiledCode.Rnw | 63
inst/doc/compiledCode.pdf | 5564 +++++++++++++++++++++++------
inst/doc/deSolve.pdf | 609 +--
inst/doc/examples/Daphnia_event.R |only
inst/doc/examples/ballode.R |only
inst/doc/examples/dynload/AquaphyEvent.R |only
inst/doc/examples/dynload/AquaphyForcing.R | 17
inst/doc/examples/dynload/AquaphyForcing.f | 12
inst/doc/examples/dynload/CCL4model.f | 12
inst/doc/examples/dynload/Forcing_lv.R | 49
inst/doc/examples/dynload/Forcing_lv.c | 3
man/aquaphy.Rd | 2
man/ccl4model.Rd | 26
man/deSolve.Rd | 6
man/diagnostics.deSolve.Rd | 2
man/events.Rd |only
man/forcings.Rd | 61
man/lsoda.Rd | 7
man/lsodar.Rd | 40
man/lsode.Rd | 7
man/lsodes.Rd | 6
man/ode.1D.Rd | 2
man/ode.Rd | 6
man/ode.band.Rd | 2
man/plot.deSolve.Rd | 65
man/rk.Rd | 11
man/rk4.Rd | 8
man/rkMethod.Rd | 16
man/vode.Rd | 5
src/DLLutil.c | 8
src/call_daspk.c | 195 -
src/call_lsoda.c | 255 -
src/call_rk4.c | 2
src/call_rkAuto.c | 265 -
src/call_rkFixed.c | 150
src/call_zvode.c | 203 -
src/deSolve.h | 148
src/deSolve_utils.c | 309 -
src/ex_CCL4model.f | 12
src/forcings.c | 261 -
src/rk_auto.c |only
src/rk_fixed.c |only
src/rk_util.c | 19
src/rk_util.h | 55
src/zvode.h | 5
60 files changed, 6596 insertions(+), 2511 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 1.05 dated 2009-12-06 and 1.06 dated 2009-12-17
DESCRIPTION | 8 ++++---- R/ND.r |only R/as.one.mode.r | 2 +- R/networklevel.R | 27 ++++++++++++++++----------- R/specieslevel.R | 21 +++++++++++++++++++-- man/ND.rd |only man/bipartite-package.Rd | 19 +++++++++++++++---- man/networklevel.Rd | 39 +++++++++++++++++++++------------------ man/plotweb.Rd | 4 ++-- man/second.extinct.Rd | 8 ++++---- man/specieslevel.Rd | 29 ++++++++++++++++++----------- man/vazquez.example.rd | 2 +- man/visweb.Rd | 8 +++++++- 13 files changed, 108 insertions(+), 59 deletions(-)
More information about SampleSizeProportions at CRAN
Permanent link
Author: Reinhard Furrer
Title: SPArse Matrix
Description: Set of function for sparse matrix algebra. Differences
with SparseM/Matrix are: (1) we only support (essentially) one
sparse matrix format, (2) based on transparent and simple
structure(s), (3) tailored for MCMC calculations within GMRF.
(4) S3 and S4 like-"compatible" ... and it is fast.
Diff between spam versions 0.15-5 dated 2009-09-18 and 0.20-2 dated 2009-12-16
DESCRIPTION | 10 +- NAMESPACE | 8 +- R/apply.R | 5 + R/definitions.R | 24 ++---- R/dist.R | 7 - R/foreign.R | 5 + R/helper.R | 119 ++++++++++++++++++++++++------ R/kronecker.R | 5 + R/plotting.R | 5 + R/profile.R | 10 -- R/spam_solve.R | 30 ++++--- R/xybind.R | 5 + data/Oral.rda |only data/germany.rda |only demo/00Index | 2 demo/article-jss-example1.R |only demo/article-jss-example2.R |only demo/article-jss.R | 28 ++++--- demo/cholesky.R | 5 + demo/spam.R | 5 + demo/timing.R | 5 + inst/NEWS | 38 +++++++++ inst/demodata |only man/Oral.Rd |only man/SPAM.Rd | 7 + man/UScounties.Rd | 5 + man/USprecip.Rd | 5 + man/adiag.Rd | 5 + man/allequal.Rd | 5 + man/apply.Rd | 7 + man/chol.Rd | 14 +-- man/complexity.Rd | 70 +++++++---------- man/det.Rd | 5 + man/diag.Rd | 5 + man/dim.Rd | 5 + man/display.Rd | 5 + man/foreign.Rd | 5 + man/germany.Rd |only man/history.spam.Rd | 13 +-- man/image.Rd | 5 + man/import.Rd | 5 + man/isSymmetric.Rd | 9 -- man/kronecker.Rd | 12 +-- man/lu.tri.Rd | 5 + man/math.Rd | 5 + man/math2.Rd | 5 + man/nearestdist.Rd | 5 + man/operations.Rd | 5 + man/options.Rd | 5 + man/ordering.Rd | 5 + man/powerboost.Rd | 5 + man/print.Rd | 10 -- man/rmvnorm.Rd | 34 ++++---- man/solve.Rd | 5 + man/spam-class.Rd | 5 + man/spam.chol.NgPeyton-class.Rd | 6 + man/spam.creation.Rd | 5 + man/spam.internal.Rd | 5 + man/summary.Rd | 5 + man/todo.Rd | 7 + man/triplet.Rd | 5 + man/version.Rd | 5 + man/xybind.Rd | 5 + src/spamown.f | 9 +- tests/demo_article-jss-example1.R |only tests/demo_article-jss-example1.Rout.save |only tests/demo_article-jss-example2.R |only tests/demo_article-jss-example2.Rout.save |only tests/demo_article-jss.R | 23 ++--- tests/demo_article-jss.Rout.save | 14 ++- tests/demo_cholesky.R | 5 + tests/demo_cholesky.Rout.save | 14 ++- tests/demo_spam.R | 5 + tests/demo_spam.Rout.save | 14 ++- tests/demo_timing.R | 29 +++++++ tests/demo_timing.Rout.save | 38 ++++++++- tests/displays.R | 5 + tests/displays.Rout.save | 14 ++- tests/dist.R | 5 + tests/dist.Rout.save | 14 ++- tests/foreign.R | 5 + tests/foreign.Rout.save | 10 +- tests/helper.R |only tests/helper.Rout.save |only tests/kronecker.R | 5 + tests/kronecker.Rout.save | 14 ++- tests/overall.R | 5 + tests/overall.Rout.save | 14 ++- tests/solve.R | 5 + tests/solve.Rout.save | 14 ++- tests/xybind.R | 5 + tests/xybind.Rout.save | 14 ++- 92 files changed, 622 insertions(+), 298 deletions(-)
Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library
Diff between rjags versions 1.0.3-12 dated 2009-11-10 and 1.0.3-13 dated 2009-12-16
DESCRIPTION | 10 +++++----- R/jags.R | 6 +++++- 2 files changed, 10 insertions(+), 6 deletions(-)
Author: Andrew Gelman
Diff between arm versions 1.2-12 dated 2009-12-13 and 1.2-12.02 dated 2009-12-16
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 2 +-
DESCRIPTION | 16 ++++++++--------
NAMESPACE | 2 +-
R/simmer.R | 1 -
man/invlogit.Rd | 6 +++---
5 files changed, 13 insertions(+), 14 deletions(-)
Author: Adrian Barnett
Diff between season versions 0.2-2 dated 2009-10-20 and 0.2-3 dated 2009-12-16
Title: Seasonal analysis of health data
Description: Routines for the seasonal analysis of health data,
including regression models, time-stratified case-crossover,
plotting functions and residual checks.
DESCRIPTION | 8 +--
NAMESPACE | 4 +
R/casecross.R | 108 +++++++++++++++++++++++++---------------------
R/cosinor.R | 10 +++-
R/createAdj.R |only
R/dumpdata.R |only
R/monthmean.R |only
R/monthplot.R |only
R/nscosinor.R | 4 +
R/plot.Cosinor.R | 8 ++-
R/plot.Monthmean.R |only
R/plotCircular.R | 33 ++++++++++----
R/print.Monthmean.R |only
R/sinusoid.R |only
R/test.R |only
data/CVDdaily.RData |binary
man/CVDdaily.Rd | 3 -
man/casecross.Rd | 16 ++----
man/ciPhase.Rd | 2
man/cipolygon-internal.Rd |only
man/cosinor.Rd | 15 ++++--
man/createAdj.Rd |only
man/flagleap-internal.Rd |only
man/invyrfraction.Rd | 2
man/kalfil-internal.Rd |only
man/monthglm.Rd | 7 +-
man/monthmean.Rd |only
man/monthplot.Rd |only
man/nochars-internal.Rd |only
man/nscosinor.Rd | 9 ++-
man/peri.Rd | 2
man/phasecalc.Rd | 2
man/plot.Cosinor.Rd | 2
man/plot.monthglm.Rd | 2
man/plot.nsCosinor.Rd | 3 -
man/plotCircle.Rd | 2
man/plotCircular.Rd | 5 +-
man/print.Cosinor.Rd | 2
man/print.Monthmean.Rd |only
man/print.casecross.Rd | 2
man/print.nsCosinor.Rd | 2
man/rinvgamma-internal.Rd |only
man/season-internal.Rd | 10 ++--
man/season-package.Rd | 38 ++++------------
man/seasrescheck.Rd | 4 -
man/sinusoid.Rd |only
man/summary.Cosinor.Rd | 3 -
man/summary.casecross.Rd | 2
man/summary.monthglm.Rd | 2
man/summary.nsCosinor.Rd | 2
man/wtest.Rd | 2
man/yrfraction.Rd | 2
52 files changed, 177 insertions(+), 141 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-55 dated 2009-12-15 and 0.0-56 dated 2009-12-16
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- NEWS | 6 ++++++ R/ggrid.R | 35 ++++++++++++++++++++--------------- 4 files changed, 33 insertions(+), 18 deletions(-)
Author: Rory Michelland
Diff between OligoSpecificitySystem versions 1.1 dated 2009-12-09 and 1.2 dated 2009-12-16
More information about OligoSpecificitySystem at CRAN
Title: Oligo Specificity System
Description: Calculate the theorical specificity of a system of
multiple primers used for PCR, qPCR primers or degenerated
primer design
DESCRIPTION | 6 +++---
R/dbb1.r | 5 ++++-
R/dbb2.r | 9 ++++++---
R/dbb3.r | 11 +++++++----
R/dbb4.r | 35 ++++++++++++++++++++++-------------
R/degencal4.r | 10 ++++++----
R/pcrcal4.r | 22 ++++++++++++++--------
7 files changed, 62 insertions(+), 36 deletions(-)
Permanent link
Author: Asger R. Pedersen
Diff between HMR versions 0.1.0 dated 2009-09-28 and 0.1.1 dated 2009-12-16
Title: Flux estimation with static chamber data
Description: Statistical analysis of static chamber concentration data
for trace gas flux estimation
DESCRIPTION | 6 +++---
R/HMR.fit1.R | 6 +++++-
man/HMR.Rd | 2 +-
3 files changed, 9 insertions(+), 5 deletions(-)
Author: Xiangyang Ye, Pharmacotherapy Outcomes Research Center,
University of Utah
Title: Medication Adherence: Commonly Used Definitions
Description: Medication Adherence: Commonly Used Definitions
Diff between medAdherence versions 1.01 dated 2009-04-28 and 1.02 dated 2009-12-16
medAdherence-1.01/medAdherence/data |only medAdherence-1.01/medAdherence/man/coms.Rd |only medAdherence-1.02/medAdherence/DESCRIPTION | 10 +++++----- medAdherence-1.02/medAdherence/R/medCMA.R | 4 ++-- medAdherence-1.02/medAdherence/R/medCMG.R | 4 ++-- medAdherence-1.02/medAdherence/R/medCMOS.R | 6 +++--- medAdherence-1.02/medAdherence/R/medCR.R | 6 +++--- medAdherence-1.02/medAdherence/R/medCSA.R | 4 ++-- medAdherence-1.02/medAdherence/R/medDBR.R | 4 ++-- medAdherence-1.02/medAdherence/R/medDTMPR.R | 4 ++-- medAdherence-1.02/medAdherence/R/medMPR.R | 4 ++-- medAdherence-1.02/medAdherence/R/medMPRm.R | 4 ++-- medAdherence-1.02/medAdherence/R/medPDC.R | 5 +++-- medAdherence-1.02/medAdherence/R/rxExampledt.R |only medAdherence-1.02/medAdherence/man/Adherence-package.Rd | 10 +++++----- medAdherence-1.02/medAdherence/man/medCMA.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medCMG.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medCMOS.Rd | 7 ++++--- medAdherence-1.02/medAdherence/man/medCR.Rd | 7 ++++--- medAdherence-1.02/medAdherence/man/medCSA.Rd | 7 ++++--- medAdherence-1.02/medAdherence/man/medDBR.Rd | 7 ++++--- medAdherence-1.02/medAdherence/man/medDTMPR.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medMPR.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medMPRm.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/medPDC.Rd | 5 +++-- medAdherence-1.02/medAdherence/man/postData.Rd | 2 +- medAdherence-1.02/medAdherence/man/preData.Rd | 2 +- medAdherence-1.02/medAdherence/man/rxExampledt.Rd |only medAdherence-1.02/medAdherence/man/rxGaps.Rd | 2 +- 29 files changed, 70 insertions(+), 59 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.3.2 dated 2009-10-13 and 3.4 dated 2009-12-16
CHANGELOG | 5 DESCRIPTION | 9 LICENSE | 10 R/mclust.R | 864 ++++++++++++++++++++++++++++++++++++---------------- R/zzz.R | 5 man/defaultPrior.Rd | 19 - man/imputeData.Rd |only man/imputePairs.Rd |only 8 files changed, 632 insertions(+), 280 deletions(-)
Author: Andrew Redd
Title: Marginal Mean Model Plots
Description: Marginal mean model plots for linear (lm) and generalized
linear models (glm). Including tools for bandwidth
exploration. Built on the work from the alr3 and locfit
packages.
Diff between marginalmodelplots versions 0.4.1 dated 2009-02-08 and 0.4.2 dated 2009-12-16
DESCRIPTION | 27 ++++++++++++++++----------- man/aicc.Rd | 4 ++-- man/mmps-package.Rd | 10 ++++------ 3 files changed, 22 insertions(+), 19 deletions(-)
More information about marginalmodelplots at CRAN
Permanent link
Author: Achim Zeileis
Title: Measuring Inequality, Concentration, and Poverty
Description: Inequality, concentration, and poverty measures. Lorenz
curves (empirical and theoretical).
Diff between ineq versions 0.2-8 dated 2007-06-08 and 0.2-9 dated 2009-12-16
DESCRIPTION | 16 +++++++++------- R/ineq.R | 19 +++++++++++++++---- man/pov.Rd | 36 +++++++++++++++++++++--------------- 3 files changed, 45 insertions(+), 26 deletions(-)
Author: Thoralf Mildenberger, Yves Rozenholc, David Zasada.
Title: Construction of regular and irregular histograms with different
options for automatic choice of bins
Description: Automatic construction of regular and irregular histograms
as described in Rozenholc/Mildenberger/Gather (2009).
Diff between histogram versions 0.0-21 dated 2009-11-12 and 0.0-22 dated 2009-12-16
DESCRIPTION | 8 ++++---- R/histogram.R | 10 ++++++---- R/histogram.irregular.R | 15 ++++++++++++--- R/histogram.regular.R | 20 +++++++++++++++----- man/histogram.Rd | 47 ++++++++++++++++++++++++++++++++++++----------- 5 files changed, 73 insertions(+), 27 deletions(-)
Author: Edzer Pebesma
Diff between gstat versions 0.9-65 dated 2009-12-02 and 0.9-66 dated 2009-12-16
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
DESCRIPTION | 16
R/krige0.R | 46
inst/doc/gstat.pdf |29768 +++++++++++++++++++++++++--------------------------
man/krige.Rd | 6
src/gls.c | 3
src/glvars.c | 1
src/lex.c | 21
src/lex.l | 7
src/parse.c | 2
src/version.h | 4
tests/line.Rout.save | 44
11 files changed, 14917 insertions(+), 15001 deletions(-)
Author: Andrew Redd
Title: Wrapper and auxilliary functions for maps package to work with
grid graphics system.
Description: The gmaps package extends the functionality of the maps
package for the grid graphics system. This enables more
advanced plots and more functionality. It also makes use of
the grid structure to fix problems encountered with the
traditional graphics system, such as resizing of graphs.
Diff between gmaps versions 0.1 dated 2008-03-06 and 0.1.1 dated 2009-12-16
DESCRIPTION | 31 +++++++++++++++++++------------ man/mapGrob.Rd | 2 +- 2 files changed, 20 insertions(+), 13 deletions(-)
Author: Hadley Wickham
Diff between ggplot2 versions 0.8.4 dated 2009-12-09 and 0.8.5 dated 2009-12-16
Title: An implementation of the Grammar of Graphics
Description: An implementation of the grammar of graphics in R. It
combines the advantages of both base and lattice graphics:
conditioning and shared axes are handled automatically, and you
can still build up a plot step by step from multiple data
sources. It also implements a sophisticated multidimensional
conditioning system and a consistent interface to map data to
aesthetic attributes. See the ggplot2 website for more
information, documentation and examples.
ggplot2-0.8.4/ggplot2/man/scale_alpha.rd |only
ggplot2-0.8.4/ggplot2/man/scale_linetype.rd |only
ggplot2-0.8.4/ggplot2/man/scale_shape.rd |only
ggplot2-0.8.4/ggplot2/man/scale_size.rd |only
ggplot2-0.8.5/ggplot2/CHANGELOG | 37 +++++
ggplot2-0.8.5/ggplot2/DESCRIPTION | 12 -
ggplot2-0.8.5/ggplot2/NEWS | 109 ++++++++++------
ggplot2-0.8.5/ggplot2/R/aaa-.r | 1
ggplot2-0.8.5/ggplot2/R/aes.r | 9 +
ggplot2-0.8.5/ggplot2/R/coord-.r | 6
ggplot2-0.8.5/ggplot2/R/coord-cartesian-.r | 15 +-
ggplot2-0.8.5/ggplot2/R/coord-cartesian-equal.r | 28 +++-
ggplot2-0.8.5/ggplot2/R/coord-cartesian-flipped.r | 2
ggplot2-0.8.5/ggplot2/R/coord-map.r | 4
ggplot2-0.8.5/ggplot2/R/coord-polar.r | 11 +
ggplot2-0.8.5/ggplot2/R/coord-transform.r | 13 +
ggplot2-0.8.5/ggplot2/R/facet-.r | 8 -
ggplot2-0.8.5/ggplot2/R/facet-grid-.r | 21 ++-
ggplot2-0.8.5/ggplot2/R/facet-wrap.r | 28 +++-
ggplot2-0.8.5/ggplot2/R/geom-hline.r | 4
ggplot2-0.8.5/ggplot2/R/geom-path-.r | 60 ++++++++
ggplot2-0.8.5/ggplot2/R/geom-text.r | 23 +++
ggplot2-0.8.5/ggplot2/R/geom-vline.r | 4
ggplot2-0.8.5/ggplot2/R/grob-grid.r | 27 +--
ggplot2-0.8.5/ggplot2/R/guides-legend.r | 48 ++++---
ggplot2-0.8.5/ggplot2/R/labels.r | 9 -
ggplot2-0.8.5/ggplot2/R/layer.r | 19 ++
ggplot2-0.8.5/ggplot2/R/plot-construction.r | 11 +
ggplot2-0.8.5/ggplot2/R/plot-render.r | 8 -
ggplot2-0.8.5/ggplot2/R/plot.r | 2
ggplot2-0.8.5/ggplot2/R/quick-plot.r | 8 -
ggplot2-0.8.5/ggplot2/R/scale-continuous-.r | 29 +++-
ggplot2-0.8.5/ggplot2/R/scale-continuous-alpha.r | 9 -
ggplot2-0.8.5/ggplot2/R/scale-continuous-colour.r | 34 +---
ggplot2-0.8.5/ggplot2/R/scale-convenience.r | 24 +++
ggplot2-0.8.5/ggplot2/R/scale-defaults.r | 1
ggplot2-0.8.5/ggplot2/R/scale-discrete-.r | 8 -
ggplot2-0.8.5/ggplot2/R/scale-discrete-colour.r | 11 +
ggplot2-0.8.5/ggplot2/R/scale-discrete-grey.r | 7 -
ggplot2-0.8.5/ggplot2/R/scale-identity.r | 9 -
ggplot2-0.8.5/ggplot2/R/scale-linetype.r | 7 -
ggplot2-0.8.5/ggplot2/R/scale-manual.r | 6
ggplot2-0.8.5/ggplot2/R/scale-shape.r | 12 +
ggplot2-0.8.5/ggplot2/R/scale-size.r | 14 +-
ggplot2-0.8.5/ggplot2/R/scales-.r | 83 +++++-------
ggplot2-0.8.5/ggplot2/R/stat-.r | 12 +
ggplot2-0.8.5/ggplot2/R/stat-bin.r | 37 +++--
ggplot2-0.8.5/ggplot2/R/stat-contour.r | 31 +---
ggplot2-0.8.5/ggplot2/R/stat-density-2d.r | 23 ++-
ggplot2-0.8.5/ggplot2/R/trans-.r | 17 --
ggplot2-0.8.5/ggplot2/R/trans-scales.r | 2
ggplot2-0.8.5/ggplot2/R/utilities-position.r | 19 ++
ggplot2-0.8.5/ggplot2/R/utilities.r | 10 +
ggplot2-0.8.5/ggplot2/R/xxx-digest.r | 2
ggplot2-0.8.5/ggplot2/R/xxx.r | 8 -
ggplot2-0.8.5/ggplot2/R/zxx.r | 6
ggplot2-0.8.5/ggplot2/expt/zzz-describe.r |only
ggplot2-0.8.5/ggplot2/inst |only
ggplot2-0.8.5/ggplot2/man/aes-s3.rd | 3
ggplot2-0.8.5/ggplot2/man/bin-xb.rd | 3
ggplot2-0.8.5/ggplot2/man/bolus-ggplot-9x.rd | 2
ggplot2-0.8.5/ggplot2/man/check-breaks-and-labels-7z.rd |only
ggplot2-0.8.5/ggplot2/man/coord_equal.rd | 10 +
ggplot2-0.8.5/ggplot2/man/equal-ranges-wa.rd | 2
ggplot2-0.8.5/ggplot2/man/expand-limits-54.rd |only
ggplot2-0.8.5/ggplot2/man/f5.rd | 2
ggplot2-0.8.5/ggplot2/man/fullseq-20.rd | 3
ggplot2-0.8.5/ggplot2/man/geom_contour.rd | 8 -
ggplot2-0.8.5/ggplot2/man/geom_density2d.rd | 8 -
ggplot2-0.8.5/ggplot2/man/geom_line.rd | 2
ggplot2-0.8.5/ggplot2/man/geom_path.rd | 30 +++-
ggplot2-0.8.5/ggplot2/man/geom_quantile.rd | 8 -
ggplot2-0.8.5/ggplot2/man/geom_text.rd | 11 +
ggplot2-0.8.5/ggplot2/man/grobGrid-67.rd | 10 -
ggplot2-0.8.5/ggplot2/man/scale_alpha_continuous.rd |only
ggplot2-0.8.5/ggplot2/man/scale_brewer.rd | 5
ggplot2-0.8.5/ggplot2/man/scale_continuous.rd | 5
ggplot2-0.8.5/ggplot2/man/scale_discrete.rd | 7 -
ggplot2-0.8.5/ggplot2/man/scale_gradient.rd | 8 -
ggplot2-0.8.5/ggplot2/man/scale_gradient2.rd | 8 -
ggplot2-0.8.5/ggplot2/man/scale_gradientn.rd | 8 -
ggplot2-0.8.5/ggplot2/man/scale_grey.rd | 5
ggplot2-0.8.5/ggplot2/man/scale_hue.rd | 5
ggplot2-0.8.5/ggplot2/man/scale_identity.rd | 11 -
ggplot2-0.8.5/ggplot2/man/scale_linetype_discrete.rd |only
ggplot2-0.8.5/ggplot2/man/scale_manual.rd | 11 -
ggplot2-0.8.5/ggplot2/man/scale_shape_discrete.rd |only
ggplot2-0.8.5/ggplot2/man/scale_size_continuous.rd |only
ggplot2-0.8.5/ggplot2/man/stat_bin.rd | 14 +-
ggplot2-0.8.5/ggplot2/man/stat_contour.rd | 1
ggplot2-0.8.5/ggplot2/man/stat_density2d.rd | 18 +-
ggplot2-0.8.5/ggplot2/man/trim-infinite-ly.rd |only
92 files changed, 780 insertions(+), 376 deletions(-)
Author: Friedrich Leisch and Bettina Gruen
Title: Flexible Mixture Modeling
Description: FlexMix implements a general framework for finite mixtures
of regression models using the EM algorithm. FlexMix provides
the E-step and all data handling, while the M-step can be
supplied by the user to easily define new models. Existing
drivers implement mixtures of standard linear models,
generalized linear models and model-based clustering.
Diff between flexmix versions 2.2-3 dated 2009-05-29 and 2.2-4 dated 2009-12-16
DESCRIPTION | 10 NAMESPACE | 6 NEWS | 9 R/allGenerics.R | 4 R/flexmix.R | 15 R/infocrit.R | 12 R/lmer.R |only R/lmm.R |only R/plot-flexmix.R | 6 R/stepFlexmix.R | 8 inst/NEWS | 9 inst/doc/flexmix-intro.pdf | 1708 +++++++++---------- inst/doc/mixture-regressions.pdf |binary inst/doc/regression-examples.pdf | 3461 +++++++++++++++++++-------------------- man/EIC.Rd |only man/ExLinear.Rd | 4 man/FLXMCmvcombi.Rd | 4 man/FLXMRlmer.Rd |only man/FLXcontrol-class.Rd | 4 man/ICL.Rd | 4 man/bioChemists.Rd | 16 man/flexmix.Rd | 4 man/salmonellaTA98.Rd | 28 man/stepFlexmix.Rd | 4 tests/r-news-2007.R |only 25 files changed, 2700 insertions(+), 2616 deletions(-)
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.3.3 dated 2009-09-18 and 4.4 dated 2009-12-16
CHANGELOG | 7 DESCRIPTION | 8 R/CRPS.default.R | 4 R/CRPScap.R |only R/MAE.default.R | 92 +++--- R/controlBMAgamma.R | 8 R/controlBMAgamma0.R | 9 R/controlBMAnormal.R | 6 R/crps.R | 5 R/crps.ensembleBMAgamma.R | 58 +-- R/crps.ensembleBMAgamma0.R | 95 ++---- R/crps.ensembleBMAnormal.R | 86 +++-- R/crps.fitBMAgamma.R | 43 +- R/crps.fitBMAgamma0.R | 62 ++-- R/crps.fitBMAnormal.R | 63 ++-- R/ensembleBMAgamma.R | 5 R/ensembleBMAgamma0.R | 28 + R/ensembleBMAnormal.R | 4 R/ensembleData.R | 8 R/fitBMAgamma.R | 87 ++--- R/fitBMAgamma0.R | 579 +++++++++++++++++++++----------------- R/fitBMAnormal.R | 6 R/mathITandFH.default.R |only R/pit.ensembleBMAgamma.R | 17 + R/pit.ensembleBMAgamma0.R | 4 R/pit.fitBMAgamma.R | 17 + R/pit.fitBMAgamma0.R | 6 R/quantBMAnormal.R | 4 R/quantileForecast.fitBMAgamma0.R | 5 R/startupSpeed.R |only R/startupSpeed.ensembleData.R |only R/subset.ensembleData.R | 2 R/verifRank.R | 4 man/MAE.Rd | 8 man/brierScore.Rd | 9 man/cdf.Rd | 8 man/controlBMAgamma.Rd | 15 man/controlBMAgamma0.Rd | 17 - man/controlBMAnormal.Rd | 6 man/crps.Rd | 34 -- man/ensBMAtest.Rd | 6 man/ensembleBMAgamma.Rd | 3 man/ensembleData.Rd | 26 + man/fitBMAgamma.Rd | 1 man/pit.Rd | 8 man/quantileForecast.Rd | 14 man/trainingData.Rd | 8 47 files changed, 839 insertions(+), 646 deletions(-)
Author: Nils B. Weidmann
Diff between cshapes versions 0.1-2 dated 2009-11-15 and 0.1-3 dated 2009-12-16
Title: CShapes Dataset and Utilities
Description: Package for CShapes, a GIS dataset of country boundaries
(1946-2008). Includes functions for data extraction and the
computation of weights matrices.
DESCRIPTION | 8 ++++----
man/cshapes-package.Rd | 12 ++++++------
2 files changed, 10 insertions(+), 10 deletions(-)
Author: Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.
Title: Efficient Estimation of Covariance and (Partial) Correlation
Description: This package implements a James-Stein-type shrinkage
estimator for the covariance matrix, with separate shrinkage
for variances and correlations. The details of the method are
explained in Sch\"afer and Strimmer (2005) and Opgen-Rhein and
Strimmer (2007). The approach is both computationally as well
as statistically very efficient, it is applicable to "small n,
large p" data, and always returns a positive definite and
well-conditioned covariance matrix. In addition to inferring
the covariance matrix the package also provides shrinkage
estimators for partial correlations, partial variances, and
regression coefficients. The inverse of the covariance and
correlation matrix can be efficiently computed, and as well as
any arbitrary power of the shrinkage correlation matrix.
Furthermore, functions are available for fast singular value
decomposition, for computing the pseudoinverse, and for
checking the rank and positive definiteness of a matrix.
Diff between corpcor versions 1.5.3 dated 2009-10-11 and 1.5.4 dated 2009-12-16
DESCRIPTION | 8 ++++---- NEWS | 4 ++++ R/mpower.R | 40 +++++++++++++++++++++++++++++++--------- man/mpower.Rd | 12 +++++++++++- 4 files changed, 50 insertions(+), 14 deletions(-)
Author: David M. Schruth
Diff between caroline versions 0.1-6 dated 2009-11-08 and 0.1-7 dated 2009-12-16
Title: Generic Functions for R
Description: The caroline package is a collection of generic functions
useful for various applications.
caroline-0.1-6/caroline/man/trunc.path.Rd |only
caroline-0.1-7/caroline/DESCRIPTION | 7 +++----
caroline-0.1-7/caroline/R/plots.R | 18 +++++++++++++++---
caroline-0.1-7/caroline/R/string.R | 24 ------------------------
4 files changed, 18 insertions(+), 31 deletions(-)
More information about UScensus2000tract at CRAN
Permanent link
More information about UScensus2000add at CRAN
Permanent link
More information about UScensus2000cdp at CRAN
Permanent link
Author: Paul Gilbert
Diff between TSdbi versions 2009.5-2 dated 2009-06-10 and 2009.11-1 dated 2009-12-16
Title: Time Series Database Interface
Description: TSdbi provides a common interface to time series
databases. The objective is to define a standard interface so
users can retrieve time series data from various sources with a
simple, common, set of commands, and so programs can be written
to be portable with respect to the data source. The SQL
implementations also provide a database table design, so users
needing to set up a time series database have a reasonably
complete way to do this easily. The interface provides for a
variety of options with respect to the representation of time
series in R. There is also a (not yet well tested) mechanism to
handle multilingual data documentation.
DESCRIPTION | 10 ++--
NAMESPACE | 2
NEWS | 126 +++++++++++++++++++++++++++------------------------
inst/doc/TSdbi.pdf |binary
man/TSdbi-package.Rd | 7 +-
5 files changed, 77 insertions(+), 68 deletions(-)
Author: Paul Gilbert
Diff between TSMySQL versions 2009.5-1 dated 2009-10-27 and 2009.10-1 dated 2009-12-16
Title: Time Series Database Interface extensions for MySQL
Description: TSMySQL provides a MySQL interface for TSdbi.
DESCRIPTION | 12 ++++++------
inst/doc/TSMySQL.pdf |binary
2 files changed, 6 insertions(+), 6 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-28 dated 2009-12-14 and 0.01-29 dated 2009-12-16
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 6 ++++++
DESCRIPTION | 8 ++++----
NAMESPACE | 2 ++
R/as.mcmc.R |only
R/jags.R | 47 ++++++++++++++++++++++-------------------------
R/jags2.R | 28 ++++++++++++++++++----------
R/traceplot.R | 2 ++
man/jags.Rd | 9 ++++++++-
8 files changed, 62 insertions(+), 40 deletions(-)
Author: Spencer Graves
Title: Companion to Tsay (2005) Analysis of Financial Time Series
Description: R companion to Tsay (2005) Analysis of Financial Time
Series, 2nd ed. (Wiley). Includes data sets, functions and
script files required to work some of the examples. Version
0.3-x includes R objects for all data files used in the text
and script files to recreate most of the analyses in chapters
1-3 and 9 plus parts of chapters 4 and 11.
Diff between FinTS versions 0.4-3 dated 2009-10-07 and 0.4-4 dated 2009-12-16
DESCRIPTION | 8 ++++---- NAMESPACE | 1 - R/Unitroot.R | 18 ++++++++++-------- 3 files changed, 14 insertions(+), 13 deletions(-)
Author: Michal Juraska
Diff between speff2trial versions 1.0.1 dated 2009-11-09 and 1.0.2 dated 2009-12-15
Title: Semiparametric efficient estimation for a two-sample treatment
effect
Description: The package performs estimation and testing of the
treatment effect in a 2-group randomized clinical trial with a
quantitative, dichotomous, or right-censored time-to-event
endpoint. The method improves efficiency by leveraging baseline
predictors of the endpoint. The inverse probability weighting
technique of Robins, Rotnitzky, and Zhao (JASA, 1994) is used
to provide unbiased estimation when the endpoint is missing at
random.
DESCRIPTION | 16 ++++++++--------
R/speffSurv.R | 27 +++++++++++----------------
man/speffSurv.Rd | 6 ++++--
man/summaryspeffSurv.Rd | 4 +++-
4 files changed, 26 insertions(+), 27 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-54 dated 2009-09-09 and 0.0-55 dated 2009-12-15
gWidgetsRGtk2-0.0-54/gWidgetsRGtk2/svn-commit.2.tmp |only gWidgetsRGtk2-0.0-54/gWidgetsRGtk2/svn-commit.tmp |only gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/ChangeLog | 28 + gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/DESCRIPTION | 8 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/NAMESPACE | 175 ++++---- gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/NEWS | 11 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/aaaGenerics.R | 195 ++++++++-- gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gbutton.R | 4 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gdroplist.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gedit.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gexpandgroup.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/ggraphics.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/ggrid.R | 73 +++ gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/ggroup.R | 8 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gimage.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gnotebook.R | 19 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gradio.R | 15 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gslider.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gspinbutton.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gtext.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gtkStuff.R | 12 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/gtree.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/R/icons.R | 2 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/TODO.txt | 43 ++ gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/man/gWidgetsRGtk2-package.Rd | 4 gWidgetsRGtk2-0.0-55/gWidgetsRGtk2/man/gWidgetsRGtk2-undocumented.Rd | 3 26 files changed, 474 insertions(+), 144 deletions(-)
Author: Jeff Gentry
Diff between twitteR versions 0.1.3 dated 2009-11-13 and 0.1.5 dated 2009-12-14
Title: R based Twitter client
Description: Provides an interface to the Twitter web API
DESCRIPTION | 6 +++---
R/dm.R | 21 +++++++++++----------
R/search.R | 8 ++++----
R/session.R | 9 +++++++--
R/status.R | 16 ++++++++--------
R/timeline.R | 16 ++++++++--------
R/users.R | 12 ++++++------
inst/doc/twitteR.pdf |binary
man/Rtweets.Rd | 3 ++-
man/dm.Rd | 10 ++++++----
man/getUser.Rd | 7 ++++---
man/publicTimeline.Rd | 9 +++++----
man/search.Rd | 3 ++-
man/updateStatus.Rd | 7 ++++---
14 files changed, 70 insertions(+), 57 deletions(-)
Author: Edzer Pebesma
Diff between sp versions 0.9-51 dated 2009-12-07 and 0.9-52 dated 2009-12-14
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
.Rbuildindex.19095 |only
DESCRIPTION | 10
NAMESPACE | 2
R/spdists.R | 25
inst/doc/sp.pdf | 3646 ++++++++++++++++++++++++------------------------
man/spDistsN1.Rd | 10
rlabs |only
tests/spDists.R |only
tests/spDists.Rout.save |only
9 files changed, 1862 insertions(+), 1831 deletions(-)
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: sos
Description: R related Search Engines
Diff between sos versions 1.1-7 dated 2009-11-03 and 1.2-2 dated 2009-12-14
sos-1.1-7/sos/inst/doc/RSiteSearch.bbl |only sos-1.1-7/sos/inst/doc/RSiteSearch.blg |only sos-1.1-7/sos/inst/doc/RSiteSearch.pdf |only sos-1.1-7/sos/inst/doc/RSiteSearch.tex |only sos-1.1-7/sos/inst/doc/RSiteSearch_body.tex |only sos-1.1-7/sos/inst/doc/sos.tex |only sos-1.1-7/sos/inst/doc/sosbib.bib |only sos-1.2-2/sos/DESCRIPTION | 8 sos-1.2-2/sos/R/findFn.R | 29 - sos-1.2-2/sos/R/summary.findFn.R | 17 sos-1.2-2/sos/R/writeFindFn2xls.R | 109 +++-- sos-1.2-2/sos/inst/doc/RJournal.sty | 1 sos-1.2-2/sos/inst/doc/sos.Rnw | 531 +++++++++++++++++++++++++++- sos-1.2-2/sos/inst/doc/sos.pdf |binary 14 files changed, 625 insertions(+), 70 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-27 dated 2009-11-12 and 0.01-28 dated 2009-12-14
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
R/autojags.R | 6 +++---
3 files changed, 11 insertions(+), 7 deletions(-)
Author: Jouni Helske
Diff between KFAS versions 0.4.7 dated 2009-11-11 and 0.4.8 dated 2009-12-14
Title: Multivariate Kalman filter and smoother, simulation smoother and
forecasting of state space models. State smoothing and
approximate likelihood of exponential family state space
models.
Description: Package KFAS provides functions for fast Kalman filtering,
state and disturbance smoothing, forecasting and simulation of
multivariate time-variant state space models. All functions can
use exact diffuse initialisation when distributions of some or
all elements of initial state vector are unknown. Filtering,
state smoothing and simulation functions use sequential
processing algorithm, which is faster than standard approach,
and it also allows singularity of prediction error variance
matrix. KFAS also contains function for likelihood of
exponential family state space models and function for state
smoothing of exponential family state space models.
KFAS-0.4.7/KFAS/man/expflik.Rd |only
KFAS-0.4.7/KFAS/man/expfsmoother.Rd |only
KFAS-0.4.8/KFAS/DESCRIPTION | 15 +--
KFAS-0.4.8/KFAS/NAMESPACE | 2
KFAS-0.4.8/KFAS/R/KFAS.R | 161 ++++++++++++++++++++++++++++++++++--
KFAS-0.4.8/KFAS/man/eflik.Rd |only
KFAS-0.4.8/KFAS/man/eflik0.Rd |only
KFAS-0.4.8/KFAS/man/efsmoother.Rd |only
KFAS-0.4.8/KFAS/src/eflik.f90 |only
9 files changed, 163 insertions(+), 15 deletions(-)
Author: Tao Huang
Title: Construct time delay gene regulatory network
Description: GeneReg is an R package for inferring time delay gene
regulatory network using time course gene expression profiles.
The main idea of time delay linear model is to fit a linear
regression model using a set of putative regulators to estimate
the transcription pattern of a specific target gene.
Diff between GeneReg versions 1.1.0 dated 2009-09-08 and 1.1.1 dated 2009-12-14
DESCRIPTION | 8 ++++---- R/plot.R | 3 +-- R/timedelay.lm.R | 2 +- man/GeneReg-package.Rd | 24 ++++++++++++++++-------- man/timedelay.lm.Rd | 6 +++--- man/timedelay.lm.batch.Rd | 3 ++- man/timedelay.univariate.lm.Rd | 5 +++-- man/ts.bspline.Rd | 2 +- 8 files changed, 31 insertions(+), 22 deletions(-)
Author: Romain Francois
Title: bibtex parser
Description: Utility to parse a bibtex file
Diff between bibtex versions 0.1-2 dated 2009-12-13 and 0.1-3 dated 2009-12-14
DESCRIPTION | 8 ++++---- R/bibtex.R | 2 +- man/bibtex-package.Rd | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Author: Achim Zeileis [aut, cre], Francisco Cribari-Neto [ctb],
Alexandre B. Simas [ctb] (earlier version by), Andrea V. Rocha
[ctb] (earlier version by)
Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent
variables, e.g., rates and proportions.
Diff between betareg versions 2.0-0 dated 2009-09-03 and 2.1-2 dated 2009-12-14
DESCRIPTION | 24 +- NAMESPACE | 2 NEWS | 34 +++ R/betareg.R | 466 ++++++++++++++++++++++++++++++++++------------- R/leverage.R | 38 ++- R/plot.betareg.R | 47 +++- data/MockJurors.rda |only data/ReadingSkills.rda |only data/StressAnxiety.rda |only demo |only inst/CITATION | 13 - inst/doc |only man/FoodExpenditure.Rd | 2 man/GasolineYield.Rd | 19 + man/MockJurors.Rd |only man/ReadingSkills.Rd |only man/StressAnxiety.Rd |only man/betareg.Rd | 117 ++++++++--- man/betareg.control.Rd | 4 man/gleverage.Rd | 8 man/plot.betareg.Rd | 7 man/predict.betareg.Rd | 14 - man/residuals.betareg.Rd | 5 man/summary.betareg.Rd | 36 ++- 24 files changed, 600 insertions(+), 236 deletions(-)
Author: Evgenia Dimitriadou, Kurt Hornik, Friedrich Leisch, David
Meyer, and Andreas Weingessel
Title: Misc Functions of the Department of Statistics (e1071), TU Wien
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines, shortest
path computation, bagged clustering, naive Bayes classifier,
...
Diff between e1071 versions 1.5-21 dated 2009-11-11 and 1.5-22 dated 2009-12-14
e1071-1.5-21/e1071/NEWS |only e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.2.r3331 |only e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.r3159 |only e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.r3191 |only e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.r3290 |only e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.r3331 |only e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.r3354 |only e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.r3745 |only e1071-1.5-21/e1071/inst/doc/svmdoc.pdf.r3767 |only e1071-1.5-22/e1071/DESCRIPTION | 10 +- e1071-1.5-22/e1071/R/sparse.R | 101 +++++++------------------ e1071-1.5-22/e1071/R/svm.R | 9 ++ e1071-1.5-22/e1071/inst/NEWS |only e1071-1.5-22/e1071/inst/doc/svmdoc.pdf |binary e1071-1.5-22/e1071/man/svm.Rd | 4 15 files changed, 46 insertions(+), 78 deletions(-)
Author: Felix Kaminsky
Diff between estout versions 0.9-1 dated 2009-12-09 and 1.0-1 dated 2009-12-14
Title: Estimates Output
Description: This package is intended to speedup the process of
creating model-comparing tables common in Macroeconomics. The
function collection stores the estimates of several models and
formats it to a table of the form estimate starred and std.err.
below. The default output is LaTeX but output to CSV for later
editing in a spreadsheet tool is possible as well. It works for
linear models (lm) and panel models from the "plm"-package
(plm). Two further implemented functions "descsto" and
"desctab" enable you to export descriptive statistics of
data-frames and single variables to LaTeX and CSV.
DESCRIPTION | 26 ++++++++++++++------------
R/descsto.R | 51 +++++++++++++++++++++++++++++++++++++++++----------
R/desctab.R | 56 +++++++++++++++++++++++++++++++++++++++-----------------
R/esttab.R | 43 +++++++++++++++++++++++--------------------
man/descsto.Rd | 3 ++-
man/desctab.Rd | 5 ++++-
man/esttab.Rd | 5 ++---
7 files changed, 125 insertions(+), 64 deletions(-)
Author: Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
Title: Visualizing the performance of scoring classifiers.
Description: ROC graphs, sensitivity/specificity curves, lift charts,
and precision/recall plots are popular examples of trade-off
visualizations for specific pairs of performance measures. ROCR
is a flexible tool for creating cutoff-parametrized 2D
performance curves by freely combining two from over 25
performance measures (new performance measures can be added
using a standard interface). Curves from different
cross-validation or bootstrapping runs can be averaged by
different methods, and standard deviations, standard errors or
box plots can be used to visualize the variability across the
runs. The parametrization can be visualized by printing cutoff
values at the corresponding curve positions, or by coloring the
curve according to cutoff. All components of a performance plot
can be quickly adjusted using a flexible parameter dispatching
mechanism. Despite its flexibility, ROCR is easy to use, with
only three commands and reasonable default values for all
optional parameters.
Diff between ROCR versions 1.0-3 dated 2009-10-28 and 1.0-4 dated 2009-12-14
DESCRIPTION | 8 ++++---- INSTALL | 2 +- NEWS | 7 +++++++ R/zzz.R | 18 ++++++++++++++++-- man/plot-methods.Rd | 2 +- 5 files changed, 29 insertions(+), 8 deletions(-)
Author: Diethelm Wuertz and Yohan Chalabi
Title: Rmetrics - Financial Time Series Objects
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between timeSeries versions 2110.85 dated 2009-12-10 and 2110.86 dated 2009-12-13
ChangeLog | 22 ++++++++++++++++++++++ DESCRIPTION | 8 ++++---- man/base-subset.Rd | 4 ++++ 3 files changed, 30 insertions(+), 4 deletions(-)
Author: Jorge Orestes Cerdeira
Diff between subselect versions 0.9-9993 dated 2009-01-05 and 0.10-1 dated 2009-12-13
Title: Selecting variable subsets
Description: A collection of functions which (i) assess the quality of
variable subsets as surrogates for a full data set, in either
an exploratory data analysis or in the context of a
multivariate linear model, and (ii) search for subsets which
are optimal under various criteria.
DESCRIPTION | 23 +++++---
R/anneal.R | 33 +++++++++---
R/ccr12.R | 20 +++----
R/createHmat.R | 26 ++++++++-
R/genetic.R | 40 ++++++++++++--
R/improve.R | 34 +++++++++---
R/leaps.R | 51 +++++++++++++-----
R/tau2.R | 18 +++---
R/validation.R | 5 +
R/validnovcrit.R | 45 ++++++++--------
R/wald.R |only
R/xi2.R | 20 +++----
R/zeta2.R | 20 +++----
inst/CHANGELOG | 25 +++++++++
man/anneal.Rd | 137 ++++++++++++++++++++++++++++++--------------------
man/ccr12.Rd | 15 +----
man/genetic.Rd | 75 ++++++++++++---------------
man/glmHmat.Rd |only
man/improve.Rd | 122 +++++++++++++++++++++++++++-----------------
man/leaps.Rd | 145 +++++++++++++++++++++++++++++++++--------------------
man/tau2.Rd | 15 +----
man/wald.Rd |only
man/xi2.Rd | 19 ++----
man/zeta2.Rd | 16 ++---
src/CCRcrt.cpp | 12 ++--
src/CCRcrt.h | 8 +-
src/GCDcrt.cpp | 20 +++----
src/GCDcrt.h | 8 +-
src/MStcrt.cpp | 18 +++---
src/MStcrt.h | 8 +-
src/Qforms.cpp | 8 +-
src/Qforms.h | 4 -
src/RMcrt.cpp | 32 +++++------
src/RMcrt.h | 12 ++--
src/RVcrt.cpp | 32 +++++------
src/RVcrt.h | 12 ++--
src/Rnk3CCRcrt.cpp | 10 +--
src/Rnk3CCRcrt.h | 4 -
src/SR_intf.cpp | 13 ++--
src/Sscma.cpp | 6 +-
src/VSQforms.cpp | 24 ++++----
src/VSQforms.h | 10 +--
src/Varsmbo.cpp | 8 +-
src/Vsmabo.h | 10 +--
src/Wrkf1.cpp | 23 +++++---
45 files changed, 704 insertions(+), 482 deletions(-)
Author: Romain Francois
Diff between parser versions 0.0-6 dated 2009-12-13 and 0.0-7 dated 2009-12-13
Title: Detailed R source code parser
Description: detailed source code parser, based on the standard R
parser but organizing the information differently
DESCRIPTION | 8 ++++----
inst/include |only
man/parser-package.Rd | 4 ++--
3 files changed, 6 insertions(+), 6 deletions(-)
Author: Philippe Grosjean
Title: Tcl/Tk Additions
Description: A series of additional Tcl commands and Tk widgets with
style and various functions (under Windows: DDE exchange,
access to the registry and icon manipulation) to supplement the
tcltk package
Diff between tcltk2 versions 1.1-0 dated 2009-07-03 and 1.1-1 dated 2009-12-13
DESCRIPTION | 17 ++++++++------ NEWS | 47 ++++++++++++++++++++++++++--------------- R/tcltk2-Internal.R | 24 +++++++++++++++++++++ TODO | 59 ++++++++++++++++++++++++---------------------------- inst/CITATION | 25 +++++++++++----------- 5 files changed, 105 insertions(+), 67 deletions(-)
Author: Romain Francois
Diff between parser versions 0.0-5 dated 2009-11-22 and 0.0-6 dated 2009-12-13
Title: Detailed R source code parser
Description: detailed source code parser, based on the standard R
parser but organizing the information differently
parser-0.0-5/parser/inst/include |only
parser-0.0-6/parser/DESCRIPTION | 8 -
parser-0.0-6/parser/NEWS | 7 -
parser-0.0-6/parser/R/parser.R | 14 +-
parser-0.0-6/parser/inst/grammar/gram.y | 2
parser-0.0-6/parser/man/parser-package.Rd | 4
parser-0.0-6/parser/src/Makevars |only
parser-0.0-6/parser/src/files.c | 2
parser-0.0-6/parser/src/gram.c | 190 +++++++++++++++---------------
parser-0.0-6/parser/src/io.c | 2
parser-0.0-6/parser/src/parser.h |only
parser-0.0-6/parser/src/stretchyList.c | 2
parser-0.0-6/parser/src/tokens.c | 2
13 files changed, 123 insertions(+), 110 deletions(-)
Author: Matthew Vavrek
Diff between fossil versions 0.2.2 dated 2009-11-26 and 0.2.3 dated 2009-12-13
Title: Palaeoecological and Palaeogeographical Analysis Tools
Description: A set of analytical tools useful in analysing ecological
and geographical data sets, both ancient and modern. The
package includes functions for estimating species richness
(Chao 1 and 2, ACE, ICE, Jacknife), shared species/beta
diversity, species area curves and geographic distances and
areas.
DESCRIPTION | 6 +-
R/sorenson.R | 12 ++---
R/spp.est.R | 123 ++++++++++++++++++++++++++++++++---------------------------
3 files changed, 76 insertions(+), 65 deletions(-)
Author: Devin S. Johnson
Title: Fit continuous-time correlated random walk models for animal
movement data
Description: The (C)orrelated (RA)ndom (W)alk (L)ibrary of R functions
was designed for fitting continuous-time correlated random walk
(CTCRW) models with time indexed covariates. The model is fit
using the Kalman-Filter on a state space version of the
continuous-time staochistic movement process.
Diff between crawl versions 1.0-4 dated 2009-05-06 and 1.1-0 dated 2009-12-13
.project |only DESCRIPTION | 10 ++-- R/crawl-internal.R | 24 +++++++++ R/crwMLE.R | 40 +++++++++++----- R/crwN2ll.R | 71 +++++++++++++++-------------- R/crwPostIS.R |only R/crwPredict.R | 115 ++++++++++++++++++++++++++++------------------- R/crwSamplePar.R |only R/crwSimulator.R |only R/getQ.R |only R/zzz.R | 7 ++ man/crawl-internal.Rd | 9 +++ man/crawl-package.Rd | 7 +- man/crwMLE.Rd | 14 +++-- man/crwN2ll.Rd | 1 man/crwPostIS.Rd |only man/crwPredict.Rd | 20 +++++--- man/crwSamplePar.Rd |only man/crwSimulator.Rd |only man/northernFurSeal.Rd | 31 +++++++++++- src/crwDriftN2ll.f90 | 26 +++++----- src/crwDriftPredict.f90 | 55 +++++++++++++--------- src/crwDriftSimulate.f90 |only src/crwN2ll.f90 | 20 ++++---- src/crwPredict.f90 | 48 +++++++++++-------- src/crwSimulate.f90 |only 26 files changed, 315 insertions(+), 183 deletions(-)
Author: Vincent Arel-Bundock
Diff between countrycode versions 0.2 dated 2009-06-14 and 0.3 dated 2009-12-13
Title: Create and manipulate data frames that contain country names or
country coding schemes
Description: Standardizes country names, converts them into one of
seven coding schemes, assigns region descriptors, and generates
empty dyadic or country-year dataframes from the coding
schemes.
DESCRIPTION | 8 +++---
R/countrycode.R | 54 +++++++++++++++++++++------------------------
man/countrycode-package.Rd | 4 +--
3 files changed, 32 insertions(+), 34 deletions(-)
Author: Jarek Tuszynski
Diff between caMassClass versions 1.7 dated 2009-10-11 and 1.8 dated 2009-12-13
Title: Processing & Classification of Protein Mass Spectra (SELDI) Data
Description: Functions for processing and classification of protein
mass spectra (SELDI) data. Also includes support for mzXML
Files.
CHANGES | 4 +++-
DESCRIPTION | 8 ++++----
R/msc.baseline.subtract.R | 4 ++--
R/msc.biomarkers.IO.csv.R | 4 ++--
R/msc.biomarkers.fill.R | 4 ++--
R/msc.classifier.run.R | 4 ++--
R/msc.classifier.test.R | 4 ++--
R/msc.copies.merge.R | 4 ++--
R/msc.features.remove.R | 4 ++--
R/msc.features.scale.R | 4 ++--
R/msc.features.select.R | 4 ++--
R/msc.mass.adjust.R | 4 ++--
R/msc.mass.cut.R | 4 ++--
R/msc.peaks.IO.csv.R | 4 ++--
R/msc.peaks.IO.mzXML.R | 4 ++--
R/msc.peaks.align.R | 4 ++--
R/msc.peaks.clust.R | 4 ++--
R/msc.peaks.find.R | 4 ++--
R/msc.preprocess.run.R | 4 ++--
R/msc.project.read.R | 4 ++--
R/msc.project.run.R | 6 ++++++
R/msc.rawMS.IO.csv.R | 5 ++---
R/msc.rawMS.IO.mzXML.R | 5 ++---
R/msc.sample.correlation.R | 4 ++--
R/mzXML.R | 15 ++++++++-------
25 files changed, 63 insertions(+), 56 deletions(-)
Author: Romain Francois
Title: bibtex parser
Description: Utility to parse a bibtex file
Diff between bibtex versions 0.1-0 dated 2009-12-11 and 0.1-2 dated 2009-12-13
DESCRIPTION | 8 inst/bibparse.output | 4 man/bibtex-package.Rd | 4 src/Makevars |only src/biblex.c | 48 +- src/bibparse.c | 841 ++++++++++++++++++++++++++++++++------------------ src/bibparse.h | 51 --- src/bibtex.h | 1 8 files changed, 595 insertions(+), 362 deletions(-)
Author: Andrew Gelman
Diff between arm versions 1.2-11.02 dated 2009-12-11 and 1.2-12 dated 2009-12-13
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 10 +++++++---
DESCRIPTION | 8 ++++----
R/simmer.R | 8 +++-----
3 files changed, 14 insertions(+), 12 deletions(-)
Author: Martin Maechler
Diff between VLMC versions 1.3-11 dated 2009-11-19 and 1.3-12 dated 2009-12-13
Title: VLMC -- Variable Length Markov Chains
Description: Functions, Classes & Methods for estimation, prediction,
and simulation (bootstrap) of VLMC -- Variable Length Markov
Chain -- Models
ChangeLog | 7 +++++++
DESCRIPTION | 8 ++++----
R/vlmc.R | 20 ++++++++++----------
man/vlmc.version.Rd | 2 +-
tests/AIC-etc.Rout.save | 23 ++++++++++++-----------
tests/iid-cutoff.Rout.save | 4 ++--
tests/pred-vlmc.Rout.save | 12 ++++++------
7 files changed, 42 insertions(+), 34 deletions(-)
Author: Jonathan M. Lees
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to analyze seismic data, via,
spectrum analysis, wavelet transforms, particle motion,
hodograms.
Diff between RSEIS versions 2.3-1 dated 2009-11-30 and 2.3-3 dated 2009-12-13
DESCRIPTION | 6 +++--- R/JGET.seis.R | 3 ++- R/convert2Rseis.R |only R/info.seis.R |only R/infoDB.R | 2 +- R/plotevol2.R | 17 ++++++++++++----- inst/doc/hodo.pdf |binary inst/doc/rseis.pdf |binary man/RSEIS-package.Rd | 2 +- man/convert2Rseis.Rd |only man/info.seis.Rd |only man/plotevol.Rd | 12 ++++++++++-- 12 files changed, 29 insertions(+), 13 deletions(-)
Author: Dirk Eddelbuettel
Diff between RQuantLib versions 0.3.0 dated 2009-09-06 and 0.3.1 dated 2009-12-13
Title: R interface to the QuantLib library
Description: The RQuantLib package makes parts of QuantLib visible to
the R user. Currently a number option pricing functions are
included, both vanilla and exotic, as well as a broad range of
fixed-income functions, as well a general utilities such as
business day calendar computations. Further software
contributions are welcome.
The QuantLib project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard
open source library for quantitative analysis, modeling,
trading, and risk management of financial assets.
The Windows binary version is self-contained and does not require a
QuantLib (or Boost) installation.
RQuantLib uses the Rcpp R/C++ interface class library. See the Rcpp
package on CRAN (or R-Forge) for more information on Rcpp.
Note that while RQuantLib's code is licensed under the GPL (v2 or
later), QuantLib itself is released under a somewhat less
restrictive Open Source license (see QuantLib-License.txt).
DESCRIPTION | 10
configure | 3111 ++++++++++++++++++---------------------
configure.in | 8
inst/ChangeLog | 31
man/Bond.Rd | 26
man/BondUtilities.Rd | 5
man/DiscountCurve.Rd | 34
man/Enum.Rd | 2
man/FixedRateBondPriceByYield.Rd | 6
man/FixedRateBondYield.Rd | 6
man/ZeroPriceByYield.Rd | 4
man/ZeroYield.Rd | 6
src/Makefile.win | 51
src/bermudan.cpp | 6
src/bonds.cpp | 14
src/curves.cpp | 151 -
src/discount.cpp | 178 +-
src/rquantlib.hpp | 4
src/utils.cpp | 8
19 files changed, 1749 insertions(+), 1912 deletions(-)
Author: Robin Nunkesser
Diff between RFreak versions 0.2-6 dated 2009-11-08 and 0.2-7 dated 2009-12-13
Title: R/FrEAK interface
Description: An R interface to a modified version of the Free
Evolutionary Algorithm Kit FrEAK. FrEAK is a toolkit written in
Java to design and analyze evolutionary algorithms. Both the R
interface and an extended version of FrEAK are contained in the
RFreak package. For more information on FrEAK see
http://sourceforge.net/projects/freak427/.
RFreak-0.2-6/RFreak/inst/java/rfreak-0.2-4.jar |only
RFreak-0.2-7/RFreak/DESCRIPTION | 8
RFreak-0.2-7/RFreak/inst/java/README | 2
RFreak-0.2-7/RFreak/inst/java/build.xml | 4
RFreak-0.2-7/RFreak/inst/java/lib/ostermillerutils_1_07_00.jar |only
RFreak-0.2-7/RFreak/inst/java/rfreak-0.2-5.jar |only
RFreak-0.2-7/RFreak/inst/java/src/freak/core/modulesupport/ClassCollector.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/core/util/GraphViz.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/gui/gpas/GPASDialog.java | 15
RFreak-0.2-7/RFreak/inst/java/src/freak/gui/scheduleeditor/ScheduleEditor.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/gui/scheduleeditor/ScheduleEditorPanel.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/fitness/pointset/AbstractRobustRegressionFitness.java | 4
RFreak-0.2-7/RFreak/inst/java/src/freak/module/fitness/pointset/AbstractStaticSingleObjectiveRobustRegressionFitness.java | 10
RFreak-0.2-7/RFreak/inst/java/src/freak/module/fitness/pointset/LQDOptimization.java | 1
RFreak-0.2-7/RFreak/inst/java/src/freak/module/operator/initialization/booleanfunction |only
RFreak-0.2-7/RFreak/inst/java/src/freak/module/postprocessor/booleanfunction/Count.java | 13
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/BooleanFunction.java | 19
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/AndNode.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/AtomicNode.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/DNFTree.java | 12
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/Data.java | 228 ++++++++--
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/OperatorNode.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/OrNode.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/StaticCompareNode.java | 16
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/StaticConstantNode.java | 10
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/StaticInputNode.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/VariableCompareNode.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/VariableConstantNode.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/searchspace/logictree/VariableInputNode.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/module/stoppingcriterion/PredictingModelFound.java | 1
RFreak-0.2-7/RFreak/inst/java/src/freak/module/view/RReturn.java | 4
RFreak-0.2-7/RFreak/inst/java/src/freak/rinterface/control/RFreak.java | 2
RFreak-0.2-7/RFreak/inst/java/src/freak/rinterface/model/RReturns.java | 17
RFreak-0.2-7/RFreak/inst/java/src/freak/rinterface/model/ScheduleConfigurator.java | 13
34 files changed, 327 insertions(+), 76 deletions(-)
Author: Jonathan M. Lees
Title: Grades Setting and Exam Maker
Description: Programs to determine student grades and create
examinations from Question banks. Programs will create
numerous multiple choice exams, randomly shuffled, for
different versions of same question list.
Diff between ProfessR versions 1.0-8 dated 2009-02-15 and 1.1-0 dated 2009-12-13
DESCRIPTION | 11 ++++--- R/IDandEM.R | 1 R/UNCketron.R |only R/getKEY.R |only R/repair.id.R | 71 ++++++++++++++++++++++++++++++++++++++++++------ R/version.exam.R | 11 ++++++- inst/doc/ExamMaker.pdf |binary inst/doc/Grader.pdf |binary man/ProfessR-package.Rd | 2 - man/UNCkeytron.Rd |only man/getKEY.Rd |only 11 files changed, 82 insertions(+), 14 deletions(-)
More information about GrassmannOptim at CRAN
Permanent link
Author: Yohan Chalabi, Christophe Dutang, Petr Savicky and Diethelm
Wuertz (except underlying C codes of (i) the SFMT algorithm
from M. Matsumoto and M. Saito, (ii) the Knuth-TAOCP RNG from
D. Knuth). See LICENCE file for details.
Title: toolbox for pseudo and quasi random number generation and RNG
tests.
Description: The package provides (1) pseudo random generators -
general linear congruential generators (Park Miller) and
multiple recursive generators (Knuth TAOCP), generalized
feedback shift register (SF-Mersenne Twister algorithm and WELL
generators); (2) quasi random generators - the Torus algorithm,
the Sobol sequence, the Halton sequence (thus include Van der
Corput sequence) and (3) some additional tests such as the gap
test, the serial test, the poker test... For true random number
generation, use the 'random' package, for Latin Hypercube
Sampling (a hybrid qmc method), use the 'lhs' package, a number
of RNGs and tests for RNGs are provided by 'RDieHarder', all
available on CRAN. There is also a small stand-alone package
'rngwell19937' for the WELL19937a RNG.
Diff between randtoolbox versions 1.07 dated 2009-02-15 and 1.09 dated 2009-12-11
randtoolbox-1.07/randtoolbox/inst/doc/Sweave.sh |only randtoolbox-1.07/randtoolbox/src/WELL1024a.c |only randtoolbox-1.07/randtoolbox/src/WELL1024a.h |only randtoolbox-1.07/randtoolbox/src/WELL1024b.c |only randtoolbox-1.07/randtoolbox/src/WELL1024b.h |only randtoolbox-1.07/randtoolbox/src/WELL19937a.c |only randtoolbox-1.07/randtoolbox/src/WELL19937a.h |only randtoolbox-1.07/randtoolbox/src/WELL19937aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL19937aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL19937b.c |only randtoolbox-1.07/randtoolbox/src/WELL19937b.h |only randtoolbox-1.07/randtoolbox/src/WELL19937bTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL19937bTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL21701a.c |only randtoolbox-1.07/randtoolbox/src/WELL21701a.h |only randtoolbox-1.07/randtoolbox/src/WELL21701aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL21701aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL23209a.c |only randtoolbox-1.07/randtoolbox/src/WELL23209a.h |only randtoolbox-1.07/randtoolbox/src/WELL23209aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL23209aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL23209b.c |only randtoolbox-1.07/randtoolbox/src/WELL23209b.h |only randtoolbox-1.07/randtoolbox/src/WELL23209bTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL23209bTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL44497a.c |only randtoolbox-1.07/randtoolbox/src/WELL44497a.h |only randtoolbox-1.07/randtoolbox/src/WELL44497aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL44497aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL512a.c |only randtoolbox-1.07/randtoolbox/src/WELL512a.h |only randtoolbox-1.07/randtoolbox/src/WELL521a.c |only randtoolbox-1.07/randtoolbox/src/WELL521a.h |only randtoolbox-1.07/randtoolbox/src/WELL521b.c |only randtoolbox-1.07/randtoolbox/src/WELL521b.h |only randtoolbox-1.07/randtoolbox/src/WELL607a.c |only randtoolbox-1.07/randtoolbox/src/WELL607a.h |only randtoolbox-1.07/randtoolbox/src/WELL607b.c |only randtoolbox-1.07/randtoolbox/src/WELL607b.h |only randtoolbox-1.07/randtoolbox/src/WELL800a.c |only randtoolbox-1.07/randtoolbox/src/WELL800a.h |only randtoolbox-1.07/randtoolbox/src/WELL800aTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL800aTemp.h |only randtoolbox-1.07/randtoolbox/src/WELL800b.c |only randtoolbox-1.07/randtoolbox/src/WELL800b.h |only randtoolbox-1.07/randtoolbox/src/WELL800bTemp.c |only randtoolbox-1.07/randtoolbox/src/WELL800bTemp.h |only randtoolbox-1.09/randtoolbox/DESCRIPTION | 38 randtoolbox-1.09/randtoolbox/LICENCE | 46 randtoolbox-1.09/randtoolbox/NAMESPACE | 21 randtoolbox-1.09/randtoolbox/R/pseudoRNG.R | 64 randtoolbox-1.09/randtoolbox/R/qmc.R | 201 randtoolbox-1.09/randtoolbox/R/quasiRNG.R | 137 randtoolbox-1.09/randtoolbox/R/randtoolboxEnv.R | 61 randtoolbox-1.09/randtoolbox/R/runifInterface.R |only randtoolbox-1.09/randtoolbox/R/testRNG.R | 61 randtoolbox-1.09/randtoolbox/R/trueRNG.R |only randtoolbox-1.09/randtoolbox/R/version.R |only randtoolbox-1.09/randtoolbox/R/zzz.R |only randtoolbox-1.09/randtoolbox/configure | 838 randtoolbox-1.09/randtoolbox/configure.ac | 4 randtoolbox-1.09/randtoolbox/inst/NEWS | 68 randtoolbox-1.09/randtoolbox/inst/doc/DOC1e5.pdf | 1467 randtoolbox-1.09/randtoolbox/inst/doc/Makefile | 11 randtoolbox-1.09/randtoolbox/inst/doc/randtoolbox.Rnw | 1673 - randtoolbox-1.09/randtoolbox/inst/doc/randtoolbox.bib | 132 randtoolbox-1.09/randtoolbox/inst/doc/randtoolbox.pdf |28928 +++++++++++++----- randtoolbox-1.09/randtoolbox/inst/doc/src |only randtoolbox-1.09/randtoolbox/inst/doc/vanilla.pdf |binary randtoolbox-1.09/randtoolbox/man/colltest.Rd | 2 randtoolbox-1.09/randtoolbox/man/freqtest.Rd | 2 randtoolbox-1.09/randtoolbox/man/gaptest.Rd | 2 randtoolbox-1.09/randtoolbox/man/get.primes.Rd |only randtoolbox-1.09/randtoolbox/man/ordertest.Rd | 2 randtoolbox-1.09/randtoolbox/man/overall-doc.Rd |only randtoolbox-1.09/randtoolbox/man/pokertest.Rd | 2 randtoolbox-1.09/randtoolbox/man/pseudoRNG.Rd | 14 randtoolbox-1.09/randtoolbox/man/quasiRNG.Rd | 25 randtoolbox-1.09/randtoolbox/man/runifInterface.Rd |only randtoolbox-1.09/randtoolbox/man/serialtest.Rd | 2 randtoolbox-1.09/randtoolbox/src/LowDiscrepancy.f | 209 randtoolbox-1.09/randtoolbox/src/SFMT-sse2.h | 62 randtoolbox-1.09/randtoolbox/src/config.h | 4 randtoolbox-1.09/randtoolbox/src/congruRand.c |only randtoolbox-1.09/randtoolbox/src/congruRand.h |only randtoolbox-1.09/randtoolbox/src/init.c | 79 randtoolbox-1.09/randtoolbox/src/locale.h | 64 randtoolbox-1.09/randtoolbox/src/primes.h |only randtoolbox-1.09/randtoolbox/src/randtoolbox.c |13022 -------- randtoolbox-1.09/randtoolbox/src/randtoolbox.h | 106 randtoolbox-1.09/randtoolbox/src/runifInterface.c |only randtoolbox-1.09/randtoolbox/src/runifInterface.h |only randtoolbox-1.09/randtoolbox/src/testrng.c | 62 randtoolbox-1.09/randtoolbox/src/testrng.h | 62 randtoolbox-1.09/randtoolbox/src/version.c |only randtoolbox-1.09/randtoolbox/src/wellrng.h |only 96 files changed, 23463 insertions(+), 24008 deletions(-)
Author: Bob Wheeler
Diff between SuppDists versions 1.1-6 dated 2009-09-30 and 1.1-8 dated 2009-12-11
Title: Supplementary distributions
Description: Ten distributions supplementing those built into R.
Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi
squared, Spearman's rho, maximum F ratio, the Pearson product
moment correlation coefficiant, Johnson distributions, normal
scores and generalized hypergeometric distributions. In
addition two random number generators of George Marsaglia are
included.
DESCRIPTION | 8 ++++----
src/dists.cc | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Author: Douglas Bates
Diff between Matrix versions 0.999375-32 dated 2009-11-22 and 0.999375-33 dated 2009-12-11
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
ChangeLog | 33 ++
DESCRIPTION | 9
Done | 1
R/Auxiliaries.R | 3
R/Ops.R | 118 ++++++--
R/not.R | 4
R/spModels.R | 2
R/sparseVector.R | 22 +
TODO | 1
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 622 +++++++++++++++++++++-----------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/include/Matrix_stubs.c | 9
inst/test-tools.R | 12
man/chol.Rd | 17 -
man/sparseVector-class.Rd | 16 +
tests/group-methods.R | 29 +-
tests/indexing.R | 21 +
tests/indexing.Rout.save | 17 -
21 files changed, 557 insertions(+), 379 deletions(-)
Author: Klaus Nordhausen, Jyrki Mottonen, Hannu Oja
Title: Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks
Description: The package provides multivariate tests, estimates and
methods based on the identity score, spatial sign score and
spatial rank score. The methods include one and c-sample
problems, shape estimation and testing, linear regression and
principal components.
Diff between MNM versions 0.95-0 dated 2009-11-09 and 0.95-1 dated 2009-12-11
DESCRIPTION | 8 +- R/mv.2way.estInternal.R | 133 ++++++++++++++++++++++++++++++------------------ R/plotMvloc.R | 16 ++--- R/plotShape.R | 14 ++--- inst |only man/MNM-package.Rd | 4 - man/mv.2way.est.Rd | 14 ++--- man/plotMvloc.Rd | 11 ++- man/plotShape.Rd | 8 ++ 9 files changed, 126 insertions(+), 82 deletions(-)
Author: Mark S. Handcock
Diff between statnet versions 2.1 dated 2008-05-02 and 2.1-1 dated 2009-12-11
Title: Software tools for the Statistical Modeling of Network Data
Description: An integrated set of tools for the representation,
visualization, analysis and simulation of network data. For an
introduction type: help(package='statnet')
statnet-2.1-1/statnet/DESCRIPTION | 32 ++++++++++--------
statnet-2.1-1/statnet/LICENSE | 8 ++--
statnet-2.1-1/statnet/R/update.statnet.R | 16 ++++-----
statnet-2.1-1/statnet/R/zzz.R | 9 ++---
statnet-2.1-1/statnet/inst/CITATION | 9 ++---
statnet-2.1-1/statnet/man/statnet-package.Rd | 47 +++++++++++++--------------
statnet-2.1-1/statnet/man/update_statnet.Rd |only
statnet-2.1/statnet/inst/CITATION.1 |only
statnet-2.1/statnet/inst/aaa |only
statnet-2.1/statnet/man/update.statnet.Rd |only
10 files changed, 66 insertions(+), 55 deletions(-)
Author: Patrick Giraudoux
Diff between pgirmess versions 1.4.2 dated 2009-11-13 and 1.4.3 dated 2009-12-11
Title: Data analysis in ecology
Description: Miscellaneous functions for analysis and display of
ecological and spatial data
DESCRIPTION | 8 ++++----
R/gps2gpx.r | 20 ++++++++++++++------
R/shannon.R | 20 ++++++++++----------
man/shannon.Rd | 2 +-
man/writeGPX.rd | 14 +++++++-------
5 files changed, 36 insertions(+), 28 deletions(-)
Author: Andrew Gelman
Diff between arm versions 1.2-10 dated 2009-11-23 and 1.2-11.02 dated 2009-12-11
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 4 ++
DESCRIPTION | 10 +++----
NAMESPACE | 9 ++++++
R/sim.R | 78 ++++++++++++++++++++++++++++-----------------------------
R/simmer.R |only
man/display.Rd | 29 ++++++++-------------
man/sim.Rd | 6 ----
7 files changed, 70 insertions(+), 66 deletions(-)
Author: Fabrice Colas
Title: Integrated methodology for the identification of homogeneous
profiles in data distribution
Description: Integrated set of tools and methods to identify
homogeneous profiles/subtypes in data distribution by cluster
analysis. It includes methods for data treatment and
pre-processing, repeated cluster analysis, model selection,
model reliability and reproducibility assessment, profiles
characterization and validation by visual and table summaries.
It applies particularly to the search for more homogeneous
profiles in cohort studies.
Diff between SDisc versions 1.18 dated 2009-12-09 and 1.19 dated 2009-12-11
SDisc-1.18/SDisc/inst/doc/LMPredicted |only SDisc-1.18/SDisc/inst/doc/OrchardSprays |only SDisc-1.18/SDisc/inst/doc/SDDataBasic |only SDisc-1.18/SDisc/inst/doc/SDDataCenter |only SDisc-1.18/SDisc/inst/doc/SDDataLinearModel |only SDisc-1.18/SDisc/inst/doc/iris |only SDisc-1.18/SDisc/inst/doc/state/figures/MM-VII,4,6015.pdf |only SDisc-1.18/SDisc/inst/doc/state/figures/oddGroup-001-BB.pdf |only SDisc-1.18/SDisc/inst/doc/state/figures/oddGroup-001-H.pdf |only SDisc-1.18/SDisc/inst/doc/state/figures/oddGroup-002-BB.pdf |only SDisc-1.18/SDisc/inst/doc/state/figures/oddGroup-002-H.pdf |only SDisc-1.18/SDisc/inst/doc/state/tables/MM-VII,4,6013.csv |only SDisc-1.18/SDisc/inst/doc/state/tables/MM-VII,5,6014.csv |only SDisc-1.18/SDisc/inst/doc/state/tables/MM-VII,5,6015.csv |only SDisc-1.19/SDisc/DESCRIPTION | 10 SDisc-1.19/SDisc/R/SDisc.R | 14 SDisc-1.19/SDisc/inst/doc/Mixt3 |only SDisc-1.19/SDisc/inst/doc/Normdep |only SDisc-1.19/SDisc/inst/doc/NormdepPredicted |only SDisc-1.19/SDisc/inst/doc/SDisc-vignette.Snw | 583 SDisc-1.19/SDisc/inst/doc/SDisc-vignette.pdf |21073 +++++++----- SDisc-1.19/SDisc/inst/doc/SDisc.sty |only SDisc-1.19/SDisc/inst/doc/cran.pdf |only SDisc-1.19/SDisc/inst/doc/figures/scenario.pdf |binary SDisc-1.19/SDisc/inst/doc/mapLatlong.pdf |only SDisc-1.19/SDisc/inst/doc/osprays |only SDisc-1.19/SDisc/inst/doc/state.csv |only SDisc-1.19/SDisc/inst/doc/state/IMAGE.RData |binary SDisc-1.19/SDisc/inst/doc/state/figures/MM-VVI,4,6022.pdf |only SDisc-1.19/SDisc/inst/doc/state/tables/MM-VII,4,6014.csv | 88 SDisc-1.19/SDisc/inst/doc/state/tables/MM-VII,4,6015.csv | 82 SDisc-1.19/SDisc/inst/doc/state/tables/MM-VII,4,6023.csv |only SDisc-1.19/SDisc/inst/doc/state/tables/MM-VVI,4,6017.csv |only SDisc-1.19/SDisc/inst/doc/state/tables/MM-VVI,4,6022.csv |only 34 files changed, 13360 insertions(+), 8490 deletions(-)
Author: Matthew K. Lau
Title: Functions for re-sampling a community matrix to compute
diversity indices at different sampling levels.
Description: There are two functions in this package, which can be used
together to estimate the Shannon's Diversity index at different
levels of sample size. A Monte-Carlo procedure is used to
re-sample a given observation at each level of sampling. The
expectation being that the mean of the re-sampling will
approach Shannon's diversity index at that sample level.
Diff between DiversitySampler versions 1.0 dated 2009-07-24 and 2.0 dated 2009-12-10
DESCRIPTION | 12 - R/DiversitySampler-internal.R | 252 ++++++++++++++++++++-------------------- R/Gd.R |only R/H.sampler.R | 84 +++++++------ R/Hs.R |only man/DiversitySampler-package.Rd | 25 +-- man/Gd.Rd |only man/H.sampler.Rd | 18 +- man/Hs.Rd |only 9 files changed, 203 insertions(+), 188 deletions(-)
More information about DiversitySampler at CRAN
Permanent link
Author: Kim Nimon
Diff between yhat versions 1.0-2 dated 2009-08-26 and 1.0-3 dated 2009-12-10
Title: Interpreting Regression Effects
Description: The purpose of this package is to provide methods for
variance partitioning for linear models and canonical
correlation and methods for interpreting regression effects
using beta weights, standardized beta weights, structure
coefficients, and adjusted effect sizes.
yhat-1.0-2/yhat/R/regr.r |only
yhat-1.0-3/yhat/DESCRIPTION | 10 +++++-----
yhat-1.0-3/yhat/R/commonalityCoefficients.R | 2 ++
yhat-1.0-3/yhat/R/regr.R |only
yhat-1.0-3/yhat/man/regr.Rd | 21 +++++++++++++--------
yhat-1.0-3/yhat/man/yhat-package.Rd | 2 +-
6 files changed, 21 insertions(+), 14 deletions(-)
Author: Diethelm Wuertz and Yohan Chalabi
Title: Rmetrics - Financial Time Series Objects
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between timeSeries versions 2100.84 dated 2009-09-28 and 2110.85 dated 2009-12-10
ChangeLog | 1844 +++++++++++++++++++++++++++++++++++++++++++++++------ DESCRIPTION | 10 R/base-Extract.R | 72 -- R/fin-drawdowns.R | 2 R/graphics-plot.R | 2 inst/doc |only man/base-subset.Rd | 9 7 files changed, 1690 insertions(+), 249 deletions(-)
Author: Diethelm Wuertz and Yohan Chalabi with contributions from
Martin Maechler, Joe W. Byers, and others
Title: Rmetrics - Chronological and Calendarical Objects
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between timeDate versions 2100.86 dated 2009-09-28 and 2110.87 dated 2009-12-10
ChangeLog | 1578 +++++++++++++++++++++++++++++++++++----- DESCRIPTION | 10 NAMESPACE | 1 R/options-RmetricsOptions.R | 9 R/timeDate-DaylightSavingTime.R | 782 ++++++++----------- inst/doc |only man/options-RmetricsOptions.Rd | 6 7 files changed, 1754 insertions(+), 632 deletions(-)
Author: John Verzani with contributions by Yvonnick Noel
Title: Poor Man's GUI
Description: Simple GUI for R using gWidgets.
Diff between pmg versions 0.9-40 dated 2009-10-13 and 0.9-41 dated 2009-12-10
ChangeLog | 7 +++++++ DESCRIPTION | 6 +++--- NEWS | 4 ++++ R/pmg.loadPackages.R | 7 +------ inst/doc/pmg.Rtex | 2 +- inst/doc/pmg.pdf |binary 6 files changed, 16 insertions(+), 10 deletions(-)
Author: S original by Trevor Hastie & Robert Tibshirani. Original R
port by Friedrich Leisch, Kurt Hornik and Brian D. Ripley.
Title: Mixture and flexible discriminant analysis
Description: Mixture and flexible discriminant analysis, multivariate
adaptive regression splines (MARS), BRUTO, ...
Diff between mda versions 0.3-5 dated 2009-11-22 and 0.4-1 dated 2009-12-10
mda-0.3-5/mda/R/df.inv.R |only mda-0.4-1/mda/ChangeLog | 26 mda-0.4-1/mda/DESCRIPTION | 16 mda-0.4-1/mda/NAMESPACE | 2 mda-0.4-1/mda/R/bruto.R |only mda-0.4-1/mda/R/coef.fda.R |only mda-0.4-1/mda/R/confusion.R |only mda-0.4-1/mda/R/confusion.default.R |only mda-0.4-1/mda/R/confusion.fda.R |only mda-0.4-1/mda/R/confusion.list.R |only mda-0.4-1/mda/R/contr.fda.R |only mda-0.4-1/mda/R/df.gold.R |only mda-0.4-1/mda/R/fda.R |only mda-0.4-1/mda/R/fix.theta.R |only mda-0.4-1/mda/R/gen.ridge.R |only mda-0.4-1/mda/R/kmeans.start.R |only mda-0.4-1/mda/R/laplacian.R |only mda-0.4-1/mda/R/llmult.R |only mda-0.4-1/mda/R/lvq.start.R |only mda-0.4-1/mda/R/mars.R |only mda-0.4-1/mda/R/mda.R | 1405 ----------------------------------- mda-0.4-1/mda/R/mda.fit.R |only mda-0.4-1/mda/R/mda.means.R |only mda-0.4-1/mda/R/mda.start.R |only mda-0.4-1/mda/R/meanPenalty.R |only mda-0.4-1/mda/R/model.matrix.mars.R |only mda-0.4-1/mda/R/plot.fda.R |only mda-0.4-1/mda/R/polybasis.R |only mda-0.4-1/mda/R/polyreg.R |only mda-0.4-1/mda/R/pplot.R |only mda-0.4-1/mda/R/pplot4.R |only mda-0.4-1/mda/R/predict.bruto.R |only mda-0.4-1/mda/R/predict.fda.R |only mda-0.4-1/mda/R/predict.gen.ridge.R |only mda-0.4-1/mda/R/predict.mars.R |only mda-0.4-1/mda/R/predict.mda.R |only mda-0.4-1/mda/R/predict.polyreg.R |only mda-0.4-1/mda/R/print.fda.R |only mda-0.4-1/mda/R/print.mda.R |only mda-0.4-1/mda/R/shrink.R |only mda-0.4-1/mda/R/shrink.mda.R |only mda-0.4-1/mda/R/softmax.R |only mda-0.4-1/mda/R/transformPenalty.R |only mda-0.4-1/mda/data/ESL.mixture.RData |only mda-0.4-1/mda/man/ESL.mixture.Rd |only mda-0.4-1/mda/man/bruto.Rd | 2 mda-0.4-1/mda/man/fda.Rd | 11 mda-0.4-1/mda/man/gen.ridge.Rd | 10 mda-0.4-1/mda/man/laplacian.Rd |only mda-0.4-1/mda/man/mda.Rd | 12 mda-0.4-1/mda/man/plot.fda.Rd |only mda-0.4-1/mda/man/softmax.Rd | 1 52 files changed, 51 insertions(+), 1434 deletions(-)
Author: John Verzani
Title: Toolkit implementation of the gWidgets API for use with web
pages
Description: Port of the gWidgets API to www using a local server or
RApache (http://biostat.mc.vanderbilt.edu/rapache/index.html)
to link R with a web page, The Ext JavaScript libararies are
used to create and manipulate widgets. (www.extjs.com)
Diff between gWidgetsWWW versions 0.0-13 dated 2009-11-13 and 0.0-14 dated 2009-12-10
DESCRIPTION | 6 +++--- NEWS | 8 ++++++-- inst/doc/gWidgetsWWW.Rnw | 4 ++-- inst/doc/gWidgetsWWW.pdf |binary 4 files changed, 11 insertions(+), 7 deletions(-)
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and
suggestions by Simon Urbanek, Philippe Grosjean and Michael
Lawrence
Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building
interactive GUIs. Atleast one of the gWidgetsXXX packages, such
as gWidgetstcltk, needs to be installed. Some icons are on loan
from the scigraphica project
http://scigraphica.sourceforge.net.
Diff between gWidgets versions 0.0-37 dated 2009-09-09 and 0.0-39 dated 2009-12-10
ChangeLog | 5 DESCRIPTION | 6 NAMESPACE | 10 NEWS | 7 R/aaaGenerics.R | 94 + inst/doc/addingToolkit.Rnw | 4 inst/doc/addingToolkit.pdf |binary inst/doc/gWidgets.Rnw | 4 inst/doc/gWidgets.pdf | 2117 +++++++++++++++++++++---------------------- man/gWidgets-handlers.Rd | 8 man/gWidgets-methods.Rd | 11 man/gWidgets-undocumented.Rd | 5 12 files changed, 1186 insertions(+), 1085 deletions(-)
Author: Jan Graffelman
Diff between calibrate versions 1.5 dated 2009-02-23 and 1.6 dated 2009-12-10
Title: Calibration of Scatterplot and Biplot Axes
Description: Package for drawing calibrated scales with tick marks on
(non-orthogonal) variable vectors in scatterplots and biplots.
DESCRIPTION | 24 -
NAMESPACE | 2
R/calibrate.R | 252 ++++++++----------
R/rad2degree.R |only
R/shiftvector.R |only
calibrate.Rd |only
inst/doc/CalibrationGuide.Snw | 265 +++++++++++--------
inst/doc/CalibrationGuide.pdf |binary
inst/doc/Rplots.pdf | 574 +++++++++++++++++++++++++++++++++---------
man/calibrate.Rd | 24 +
man/rad2degree.Rd |only
man/shiftvector.Rd |only
12 files changed, 755 insertions(+), 386 deletions(-)
Author: Michael Malecki
Title: apsrtable model-output formatter for social science
Description: Formats latex tables from one or more model objects
side-by-side with standard errors below, not unlike tables
found in such journals as the American Political Science
Review.
Diff between apsrtable versions 0.7-4 dated 2009-05-12 and 0.7-6 dated 2009-12-10
DESCRIPTION | 10 +-- NAMESPACE | 2 R/apsrtable.R | 129 ++++++++++++++++++++++++++++++++++++++------------- inst/doc/guide.tex | 10 +-- man/apsrtable.Rd | 98 ++++++++++++++++++++++++-------------- man/modelInfo.Rd | 6 +- man/notefunctions.Rd | 1 7 files changed, 178 insertions(+), 78 deletions(-)
Author: Beatriz Pateiro-Lopez, Alberto Rodriguez-Casal.
Title: Generalization of the convex hull of a sample of points in the
plane
Description: This package computes the alpha-shape and alpha-convex
hull of a given sample of points in the plane. The concepts of
alpha-shape and alpha-convex hull generalize the definition of
the convex hull of a finite set of points. The programming is
based on the duality between the Voronoi diagram and Delaunay
triangulation. The package also includes a function that
returns the Delaunay mesh of a given sample of points and its
dual Voronoi diagram in one single object.
Diff between alphahull versions 0.1-1 dated 2009-07-18 and 0.2-0 dated 2009-12-10
DESCRIPTION | 10 R/ahull.R | 302 R/areaahull.R |only R/plot.ahull.R | 15 inst/doc/Rplots.pdf |168163 +++++++++++++++++++++-------------------------- inst/doc/alphahull.pdf |119390 +++++++++++++++------------------ inst/doc/alphahull.rnw | 32 inst/doc/biblioJSS.bib | 2 man/ahull.Rd | 24 man/alphahull-package.Rd | 4 man/areaahull.Rd |only man/ashape.Rd | 2 man/plot.ashape.Rd | 2 13 files changed, 134368 insertions(+), 153578 deletions(-)
Author: Ulrike Groemping
Title: R Commander Plugin for (industrial) Design of Experiments
Description: WARNING: This package is currently in beta status! The
package provides a platform-independent GUI for design of
experiments. It is implemented as a plugin to the R-Commander,
which is a more general graphical user interface for statistics
in R based on tcl/tk. DoE functionality can be accessed through
the menu Design that is added to the R-Commander menus.
Diff between RcmdrPlugin.DoE versions 0.6-7 dated 2009-11-22 and 0.6-8 dated 2009-12-10
DESCRIPTION | 8 ++++---- R/Menu.changecontr.R |only R/Menu.colremove.R |only R/Menu.responses.R | 4 ++-- R/checkers.R | 19 +++++++++++++++++++ inst/NEWS | 6 ++++++ inst/etc/menus.txt | 2 ++ man/Menu.Modify.Rd | 15 ++++++++++++++- man/Menu.changecontr.Rd |only man/Menu.colremove.Rd |only man/Menu.responses.Rd |only man/RcmdrPlugin.DoEUndocumentedFunctions.Rd | 3 ++- 12 files changed, 49 insertions(+), 8 deletions(-)
More information about RcmdrPlugin.DoE at CRAN
Permanent link
Author: Brian S. Everitt and Torsten Hothorn
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Description: Functions, data sets, analyses and examples from the
second edition of the book `A Handbook of Statistical Analyses
Using R' (Brian S. Everitt and Torsten Hothorn, Chapman &
Hall/CRC, 2008). The first chapter of the book, which is
entitled `An Introduction to R', is completely included in this
package, for all other chapters, a vignette containing all data
analyses is available.
Diff between HSAUR2 versions 1.0-0 dated 2009-07-16 and 1.0-1 dated 2009-12-10
DESCRIPTION | 8 inst/doc/Ch_analysing_longitudinal_dataI.Rnw | 23 inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.Rnw | 71 inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.Rnw | 4 inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_cluster_analysis.Rnw | 3 inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.Rnw | 2 inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.Rnw | 2 inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.Rnw | 40 inst/doc/Ch_errata.pdf |binary inst/doc/Ch_gam.Rnw | 2 inst/doc/Ch_gam.pdf |binary inst/doc/Ch_graphical_display.Rnw | 2 inst/doc/Ch_graphical_display.pdf |binary inst/doc/Ch_introduction_to_R.Rnw | 4 inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.Rnw | 81 inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.Rnw | 2 inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_multidimensional_scaling.Rnw | 2 inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.Rnw | 180 inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.Rnw | 4 inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_recursive_partitioning.Rnw | 8 inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.Rnw | 4 inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_simultaneous_inference.Rnw | 14 inst/doc/Ch_simultaneous_inference.pdf |binary inst/doc/Ch_survival_analysis.Rnw | 2 inst/doc/Ch_survival_analysis.pdf |binary inst/doc/figures/HSAUR-AItR-Forbes2000-country-plot.pdf | 26 inst/doc/figures/HSAUR-AItR-Forbes2000-marketvalue-sales-shading.pdf | 30 inst/doc/figures/HSAUR-AItR-Forbes2000-marketvalue-sales.pdf | 24 inst/doc/figures/HSAUR-AItR-Forbes2000-marketvalue.pdf | 26 inst/doc/figures/HSAUR-ALDI-dropout.pdf |only inst/doc/figures/HSAUR-ALDI-plot-BtheB.pdf | 28 inst/doc/figures/HSAUR-ALDI-qqnorm-BtheB.pdf | 28 inst/doc/figures/HSAUR-ALDII-plot1.pdf | 28 inst/doc/figures/HSAUR-ALDII-plot2.pdf | 28 inst/doc/figures/HSAUR-ANOVA-foster-plot.pdf | 24 inst/doc/figures/HSAUR-ANOVA-foster-tukeyHSDplot.pdf | 26 inst/doc/figures/HSAUR-ANOVA-skulls-fig.pdf | 24 inst/doc/figures/HSAUR-ANOVA-weightgain-iplot-nice.pdf | 24 inst/doc/figures/HSAUR-ANOVA-weightgain-plot.pdf | 24 inst/doc/figures/HSAUR-BCG-Latitude-plot.pdf | 26 inst/doc/figures/HSAUR-CA-planet-ss.pdf | 26 inst/doc/figures/HSAUR-CA-planets-mclust-plot.pdf | 26 inst/doc/figures/HSAUR-CA-planets-mclust-scatter.pdf | 26 inst/doc/figures/HSAUR-CA-planets-mclust-scatterclust.pdf | 26 inst/doc/figures/HSAUR-CA-planets-scatter.pdf | 26 inst/doc/figures/HSAUR-CA-pottery-distplot.pdf | 24 inst/doc/figures/HSAUR-CA-pottery-hclust.pdf | 26 inst/doc/figures/HSAUR-CI-roomwidth-plot.pdf | 26 inst/doc/figures/HSAUR-DAGD-CHFLS-RAincome3.pdf | 26 inst/doc/figures/HSAUR-DAGD-CHFLS-happy.pdf | 24 inst/doc/figures/HSAUR-DAGD-CHFLS-happy_income.pdf | 24 inst/doc/figures/HSAUR-DAGD-CHFLS-health_happy.pdf | 24 inst/doc/figures/HSAUR-DAGD-USmelanoma-boxocean.pdf | 24 inst/doc/figures/HSAUR-DAGD-USmelanoma-dens.pdf | 24 inst/doc/figures/HSAUR-DAGD-USmelanoma-histbox.pdf | 24 inst/doc/figures/HSAUR-DAGD-USmelanoma-lat.pdf | 26 inst/doc/figures/HSAUR-DAGD-USmelanoma-xy.pdf | 26 inst/doc/figures/HSAUR-DE-CYGOB1-contour.pdf | 1760 - inst/doc/figures/HSAUR-DE-CYGOB1-persp.pdf |16830 +++++----- inst/doc/figures/HSAUR-DE-epakernel-fig.pdf | 24 inst/doc/figures/HSAUR-DE-faithful-2Dplot.pdf | 24 inst/doc/figures/HSAUR-DE-faithful-boot-plot.pdf | 36 inst/doc/figures/HSAUR-DE-faithful-density.pdf | 26 inst/doc/figures/HSAUR-DE-kernel-figs.pdf | 34 inst/doc/figures/HSAUR-DE-x-bumps.pdf | 34 inst/doc/figures/HSAUR-GAM-USairpollution-boostplot.pdf | 718 inst/doc/figures/HSAUR-GAM-USairpollution-residplot.pdf | 140 inst/doc/figures/HSAUR-GAM-kyphosis-gamplot.pdf | 1904 - inst/doc/figures/HSAUR-GAM-kyphosis-plot.pdf | 24 inst/doc/figures/HSAUR-GAM-men1500m-lm.pdf | 26 inst/doc/figures/HSAUR-GAM-men1500m-plot.pdf | 26 inst/doc/figures/HSAUR-GAM-men1500m-quad.pdf | 26 inst/doc/figures/HSAUR-GAM-men1500m-smooth.pdf | 26 inst/doc/figures/HSAUR-GLM-plasma-bubble.pdf | 26 inst/doc/figures/HSAUR-GLM-plasma-plot.pdf | 24 inst/doc/figures/HSAUR-GLM-role-fitted1.pdf | 24 inst/doc/figures/HSAUR-GLM-role-fitted2.pdf | 24 inst/doc/figures/HSAUR-GLM-role-plot2.pdf | 26 inst/doc/figures/HSAUR-MA-funnel-ex.pdf | 26 inst/doc/figures/HSAUR-MA-smoking-OR-plot.pdf | 24 inst/doc/figures/HSAUR-MA-smoking-funnel.pdf | 26 inst/doc/figures/HSAUR-MDS-voting-Shepard.pdf | 24 inst/doc/figures/HSAUR-MDS-voting-plot.pdf | 24 inst/doc/figures/HSAUR-MDS-watervoles-mst.pdf | 24 inst/doc/figures/HSAUR-MDS-watervoles-plot.pdf | 24 inst/doc/figures/HSAUR-MLR-clouds-boxplots.pdf | 26 inst/doc/figures/HSAUR-MLR-clouds-cook.pdf | 24 inst/doc/figures/HSAUR-MLR-clouds-lmplot.pdf | 26 inst/doc/figures/HSAUR-MLR-clouds-qqplot.pdf | 28 inst/doc/figures/HSAUR-MLR-clouds-residplot.pdf | 24 inst/doc/figures/HSAUR-MLR-clouds-scatterplots.pdf | 26 inst/doc/figures/HSAUR-MLR-hubble-lmplot.pdf |only inst/doc/figures/HSAUR-MLR-hubble-plot.pdf |only inst/doc/figures/HSAUR-PCA-heptathlon-biplot.pdf | 24 inst/doc/figures/HSAUR-PCA-heptathlon-pca-plot.pdf | 26 inst/doc/figures/HSAUR-PCA-heptathlon-scatter.pdf | 26 inst/doc/figures/HSAUR-PCA-heptathlon-scatter2.pdf | 26 inst/doc/figures/HSAUR-PCA-heptathlonscore.pdf | 26 inst/doc/figures/HSAUR-RP-bodyfat-ctree-plot.pdf | 104 inst/doc/figures/HSAUR-RP-bodyfat-plot.pdf | 26 inst/doc/figures/HSAUR-RP-bodyfat-predict.pdf | 26 inst/doc/figures/HSAUR-RP-bodyfat-pruneplot.pdf | 26 inst/doc/figures/HSAUR-RP-glaucoma-baggplot.pdf | 26 inst/doc/figures/HSAUR-RP-glaucoma-ctree-plot.pdf | 46 inst/doc/figures/HSAUR-RP-glaucoma-plot.pdf | 24 inst/doc/figures/HSAUR-SA-GBSG2-Martingal.pdf | 24 inst/doc/figures/HSAUR-SA-GBSG2-ctree-plot.pdf | 40 inst/doc/figures/HSAUR-SA-GBSG2-plot.pdf | 24 inst/doc/figures/HSAUR-SA-GBSG2-zph-plot.pdf | 26 inst/doc/figures/HSAUR-SA-glioma-KM.pdf | 26 inst/doc/figures/HSAUR-SI-assoc-plot.pdf | 26 inst/doc/figures/HSAUR-SI-roomwidth-boxplot.pdf | 28 inst/doc/figures/HSAUR-SI-water-plot.pdf | 28 inst/doc/figures/HSAUR-SI-wavese-boxplot.pdf | 28 inst/doc/figures/HSAUR-SIMC-alpha-confint-plot.pdf | 28 inst/doc/figures/HSAUR-SIMC-alpha-data-figure.pdf | 26 inst/doc/figures/HSAUR-SIMC-clouds-lmplot.pdf | 28 inst/doc/figures/HSAUR-SIMC-trees-plot.pdf | 26 inst/doc/preface.Rnw | 2 inst/doc/preface.pdf |binary inst/doc/preface2.Rnw | 2 inst/doc/preface2.pdf |binary inst/doc/todo.Rnw | 2 inst/doc/todo.pdf |binary tests/Ch_analysing_longitudinal_dataI.R | 15 tests/Ch_analysing_longitudinal_dataII.R | 30 tests/Ch_cluster_analysis.R | 1 tests/Ch_errata.R |only tests/Ch_introduction_to_R.R | 2 tests/Ch_logistic_regression_glm.R | 108 tests/Ch_multiple_linear_regression.R | 97 tests/Ch_recursive_partitioning.R | 26 tests/preface.R |only tests/preface2.R |only tests/todo.R |only 149 files changed, 12368 insertions(+), 12041 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 1.0-2 dated 2009-11-26 and 1.0-3 dated 2009-12-10
DESCRIPTION | 8 ++++---- R/FrF2.R | 2 ++ inst/NEWS | 4 ++++ 3 files changed, 10 insertions(+), 4 deletions(-)
Author: Carla Moreira, Jacobo de Uña-Álvarez and Rosa Crujeiras
Title: Doubly truncated data analysis
Description: This package implements different algorithms for analyzing
randomly truncated data, one-sided and two-sided (i.e. doubly)
truncated data.
Diff between DTDA versions 1.2-0 dated 2009-11-05 and 1.2-1 dated 2009-12-10
DESCRIPTION | 12 +- R/efron.petrosian.R | 9 - R/lynden.R | 10 -- R/shen.R | 223 ++++++++++++++++++++++++++++++++++++++----------- man/DTDA-package.Rd | 7 - man/efron.petrosian.Rd | 3 man/lynden.Rd | 3 man/shen.Rd | 10 +- 8 files changed, 197 insertions(+), 80 deletions(-)
Author: Jeff Hallman
Diff between tis versions 1.8 dated 2009-11-19 and 1.9 dated 2009-12-09
Title: Time Indexes and Time Indexed Series
Description: Functions and S3 classes for time indexes and time indexed
series, which are compatible with FAME frequencies.
DESCRIPTION | 7 +++----
NEWS | 7 +++++++
R/convert.R | 8 +++++---
3 files changed, 15 insertions(+), 7 deletions(-)
Author: Hadley Wickham
Diff between ggplot2 versions 0.8.3 dated 2009-04-20 and 0.8.4 dated 2009-12-09
Title: An implementation of the Grammar of Graphics
Description: An implementation of the grammar of graphics in R. It
combines the advantages of both base and lattice graphics:
conditioning and shared axes are handled automatically, and you
can still build up a plot step by step from multiple data
sources. It also implements a sophisticated multidimensional
conditioning system and a consistent interface to map data to
aesthetic attributes. See the ggplot2 website for more
information, documentation and examples.
ggplot2-0.8.3/ggplot2/man/nullGrob-6r.rd |only
ggplot2-0.8.3/ggplot2/texput.log |only
ggplot2-0.8.4/ggplot2/CHANGELOG | 45 +++++
ggplot2-0.8.4/ggplot2/DESCRIPTION | 8 -
ggplot2-0.8.4/ggplot2/NEWS | 78 ++++------
ggplot2-0.8.4/ggplot2/R/aaa-html.r | 2
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ggplot2-0.8.4/ggplot2/R/annotation.r | 3
ggplot2-0.8.4/ggplot2/R/coord-polar.r | 1
ggplot2-0.8.4/ggplot2/R/facet-grid-.r | 4
ggplot2-0.8.4/ggplot2/R/facet-wrap.r | 25 +--
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ggplot2-0.8.4/ggplot2/R/geom-.r | 2
ggplot2-0.8.4/ggplot2/R/geom-blank.r | 2
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ggplot2-0.8.4/ggplot2/R/geom-point-jitter.r | 2
ggplot2-0.8.4/ggplot2/R/geom-ribbon-.r | 7
ggplot2-0.8.4/ggplot2/R/geom-smooth.r | 3
ggplot2-0.8.4/ggplot2/R/grob-grid.r | 4
ggplot2-0.8.4/ggplot2/R/grob-null.r | 30 ++-
ggplot2-0.8.4/ggplot2/R/guides-axis.r | 4
ggplot2-0.8.4/ggplot2/R/guides-legend.r | 4
ggplot2-0.8.4/ggplot2/R/layer.r | 10 -
ggplot2-0.8.4/ggplot2/R/plot-build.r | 1
ggplot2-0.8.4/ggplot2/R/plot-render.r | 11 -
ggplot2-0.8.4/ggplot2/R/position-collide.r | 13 +
ggplot2-0.8.4/ggplot2/R/save.r | 4
ggplot2-0.8.4/ggplot2/R/scale-continuous-.r | 2
ggplot2-0.8.4/ggplot2/R/scale-continuous-colour.r | 16 +-
ggplot2-0.8.4/ggplot2/R/scale-datetime.r | 10 +
ggplot2-0.8.4/ggplot2/R/scale-discrete-position.r | 6
ggplot2-0.8.4/ggplot2/R/scale-size.r | 3
ggplot2-0.8.4/ggplot2/R/stat-.r | 5
ggplot2-0.8.4/ggplot2/R/stat-bin.r | 12 +
ggplot2-0.8.4/ggplot2/R/stat-density.r | 7
ggplot2-0.8.4/ggplot2/R/stat-qq.r | 2
ggplot2-0.8.4/ggplot2/R/stat-quantile.r | 4
ggplot2-0.8.4/ggplot2/R/stat-smooth.r | 2
ggplot2-0.8.4/ggplot2/R/stat-spoke.r | 4
ggplot2-0.8.4/ggplot2/R/stat-summary.r | 2
ggplot2-0.8.4/ggplot2/R/theme-elements.r | 2
ggplot2-0.8.4/ggplot2/R/theme.r | 2
ggplot2-0.8.4/ggplot2/R/trans-.r | 2
ggplot2-0.8.4/ggplot2/R/trans-scales.r | 10 +
ggplot2-0.8.4/ggplot2/R/utilities-grid.r | 4
ggplot2-0.8.4/ggplot2/R/utilities-layer.r | 2
ggplot2-0.8.4/ggplot2/R/xxx-digest.r | 7
ggplot2-0.8.4/ggplot2/R/xxx.r | 2
ggplot2-0.8.4/ggplot2/man/absoluteGrob-5d.rd | 2
ggplot2-0.8.4/ggplot2/man/accessors-print-nc.rd | 4
ggplot2-0.8.4/ggplot2/man/add-group-by.rd | 2
ggplot2-0.8.4/ggplot2/man/add-missing-levels-di.rd | 4
ggplot2-0.8.4/ggplot2/man/aes-all-9y.rd | 2
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ggplot2-0.8.4/ggplot2/man/aesdefaults-6k.rd | 4
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ggplot2-0.8.4/ggplot2/man/all-rdoc-pages-create-7y.rd | 4
ggplot2-0.8.4/ggplot2/man/alpha-wb.rd | 4
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ggplot2-0.8.4/ggplot2/man/assign-viewports-r1.rd | 2
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ggplot2-0.8.4/ggplot2/man/borders-yk.rd | 2
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ggplot2-0.8.4/ggplot2/man/col-hcl-7m.rd | 4
ggplot2-0.8.4/ggplot2/man/collide-5k.rd | 2
ggplot2-0.8.4/ggplot2/man/comma-1e.rd | 4
ggplot2-0.8.4/ggplot2/man/compare-img-95.rd | 4
ggplot2-0.8.4/ggplot2/man/compute-intercept-2o.rd | 4
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ggplot2-0.8.4/ggplot2/man/date-breaks-d1.rd | 4
ggplot2-0.8.4/ggplot2/man/dhist-z7.rd | 4
ggplot2-0.8.4/ggplot2/man/dir-diff-2f.rd | 4
ggplot2-0.8.4/ggplot2/man/discrete-range-fu.rd | 4
ggplot2-0.8.4/ggplot2/man/dollar-3n.rd | 4
ggplot2-0.8.4/ggplot2/man/empty-cs.rd | 4
ggplot2-0.8.4/ggplot2/man/equal-dims-he.rd | 4
ggplot2-0.8.4/ggplot2/man/equal-ranges-wa.rd | 4
ggplot2-0.8.4/ggplot2/man/expand-range-8l.rd | 4
ggplot2-0.8.4/ggplot2/man/f5.rd | 4
ggplot2-0.8.4/ggplot2/man/firstUpper-kl.rd | 4
ggplot2-0.8.4/ggplot2/man/floor-date-i9.rd | 4
ggplot2-0.8.4/ggplot2/man/force-matrix-us.rd | 4
ggplot2-0.8.4/ggplot2/man/fortify-SpatialPolygonsDataFrame-n8.rd | 4
ggplot2-0.8.4/ggplot2/man/fortify-dm.rd | 4
ggplot2-0.8.4/ggplot2/man/fortify-lm-nd.rd | 4
ggplot2-0.8.4/ggplot2/man/fullseq-20.rd | 4
ggplot2-0.8.4/ggplot2/man/fullseq-date-ol.rd | 2
ggplot2-0.8.4/ggplot2/man/geditGrob-5b.rd | 4
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ggplot2-0.8.4/ggplot2/man/geom_area.rd | 5
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ggplot2-0.8.4/ggplot2/man/geom_crossbar.rd | 2
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ggplot2-0.8.4/ggplot2/man/geom_density2d.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_errorbar.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_errorbarh.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_freqpoly.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_hex.rd | 2
ggplot2-0.8.4/ggplot2/man/geom_histogram.rd | 2
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ggplot2-0.8.4/ggplot2/man/get-rev-ag.rd | 6
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ggplot2-0.8.4/ggplot2/man/ggplot-data-frame-d3.rd | 4
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ggplot2-0.8.4/ggplot2/man/is-position-aes-5l.rd | 4
ggplot2-0.8.4/ggplot2/man/label-both-cu.rd | 2
ggplot2-0.8.4/ggplot2/man/label-parsed-ov.rd | 2
ggplot2-0.8.4/ggplot2/man/label-value-9n.rd | 2
ggplot2-0.8.4/ggplot2/man/labs-df.rd | 2
ggplot2-0.8.4/ggplot2/man/last-plot-9d.rd | 6
ggplot2-0.8.4/ggplot2/man/limits-nu.rd | 2
ggplot2-0.8.4/ggplot2/man/map-data-ax.rd | 2
ggplot2-0.8.4/ggplot2/man/midwest.rd | 4
ggplot2-0.8.4/ggplot2/man/muted-5j.rd | 4
ggplot2-0.8.4/ggplot2/man/nice-ramp-fd.rd | 4
ggplot2-0.8.4/ggplot2/man/panelGrob-da.rd | 4
ggplot2-0.8.4/ggplot2/man/parse-unit-spec-ps.rd | 4
ggplot2-0.8.4/ggplot2/man/percent-8m.rd | 4
ggplot2-0.8.4/ggplot2/man/plot-theme-9b.rd | 4
ggplot2-0.8.4/ggplot2/man/plotmatrix-95.rd | 2
ggplot2-0.8.4/ggplot2/man/pos-dodge-6a.rd | 4
ggplot2-0.8.4/ggplot2/man/pos-fill-96.rd | 4
ggplot2-0.8.4/ggplot2/man/pos-stack-ev.rd | 4
ggplot2-0.8.4/ggplot2/man/precision-hd.rd | 4
ggplot2-0.8.4/ggplot2/man/predictdf-62.rd | 4
ggplot2-0.8.4/ggplot2/man/print-ggplot-0n.rd | 4
ggplot2-0.8.4/ggplot2/man/print-theme-55.rd | 4
ggplot2-0.8.4/ggplot2/man/ps-ie.rd | 4
ggplot2-0.8.4/ggplot2/man/rdoc-auto-link-g4.rd | 4
ggplot2-0.8.4/ggplot2/man/rdoc-from-html-55.rd | 2
ggplot2-0.8.4/ggplot2/man/rect-to-poly-24.rd | 4
ggplot2-0.8.4/ggplot2/man/rename-aes-ay.rd | 4
ggplot2-0.8.4/ggplot2/man/rescale-dp.rd | 4
ggplot2-0.8.4/ggplot2/man/safe-call-7b.rd | 2
ggplot2-0.8.4/ggplot2/man/same-file-xm.rd | 4
ggplot2-0.8.4/ggplot2/man/save-examples-zh.rd | 2
ggplot2-0.8.4/ggplot2/man/scale_datetime.rd | 10 +
ggplot2-0.8.4/ggplot2/man/scale_gradientn.rd | 4
ggplot2-0.8.4/ggplot2/man/scale_size.rd | 4
ggplot2-0.8.4/ggplot2/man/scales-list-3z.rd | 4
ggplot2-0.8.4/ggplot2/man/scientific-fz.rd | 4
ggplot2-0.8.4/ggplot2/man/set-default-scale-47.rd | 2
ggplot2-0.8.4/ggplot2/man/set-last-plot-8d.rd | 4
ggplot2-0.8.4/ggplot2/man/setup-viewports-58.rd | 4
ggplot2-0.8.4/ggplot2/man/stairstep-as.rd | 4
ggplot2-0.8.4/ggplot2/man/stat_bin.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_bin2d.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_binhex.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_boxplot.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_contour.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_density.rd | 9 -
ggplot2-0.8.4/ggplot2/man/stat_density2d.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_qq.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_quantile.rd | 4
ggplot2-0.8.4/ggplot2/man/stat_smooth.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_spoke.rd | 4
ggplot2-0.8.4/ggplot2/man/stat_sum.rd | 2
ggplot2-0.8.4/ggplot2/man/stat_summary.rd | 2
ggplot2-0.8.4/ggplot2/man/strip-dots-g2.rd | 4
ggplot2-0.8.4/ggplot2/man/summarise-by-x-13.rd | 2
ggplot2-0.8.4/ggplot2/man/summary-ggplot-cv.rd | 2
ggplot2-0.8.4/ggplot2/man/surround-viewports-03.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-blank-f4.rd | 6
ggplot2-0.8.4/ggplot2/man/theme-bw-pq.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-gray-gw.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-line-49.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-rect-f3.rd | 2
ggplot2-0.8.4/ggplot2/man/theme-render-36.rd | 2
ggplot2-0.8.4/ggplot2/man/theme-segment-t0.rd | 4
ggplot2-0.8.4/ggplot2/man/theme-text-9a.rd | 4
ggplot2-0.8.4/ggplot2/man/time-breaks-om.rd | 4
ggplot2-0.8.4/ggplot2/man/to-date-og.rd | 4
ggplot2-0.8.4/ggplot2/man/to-time-1x.rd | 4
ggplot2-0.8.4/ggplot2/man/tr-o7.rd | 4
ggplot2-0.8.4/ggplot2/man/transform-position-w3.rd | 4
ggplot2-0.8.4/ggplot2/man/try-require-by.rd | 4
ggplot2-0.8.4/ggplot2/man/ulevels-qj.rd | 4
ggplot2-0.8.4/ggplot2/man/uniquecols-cf.rd | 4
ggplot2-0.8.4/ggplot2/man/update-geom-defaults-1v.rd | 2
ggplot2-0.8.4/ggplot2/man/update-labels-kd.rd | 2
ggplot2-0.8.4/ggplot2/man/update-stat-defaults-wc.rd | 4
ggplot2-0.8.4/ggplot2/man/vp-name-ea.rd | 2
ggplot2-0.8.4/ggplot2/man/vp-path-c6.rd | 2
ggplot2-0.8.4/ggplot2/man/wrap-hmisc-hc.rd | 4
ggplot2-0.8.4/ggplot2/man/xlim-db.rd | 2
ggplot2-0.8.4/ggplot2/man/ylim-ok.rd | 2
ggplot2-0.8.4/ggplot2/man/zeroGrob-i3.rd |only
249 files changed, 617 insertions(+), 480 deletions(-)
Author: CHARLOTTE MAIA
Title: Multivariate ECDF Based Models
Description: Univariate and multivariate ECDFs. This produces step
functions, methods for producing smooth(ish) distribution
functions are being considered.
Diff between mecdf versions 0.1.0 dated 2009-12-06 and 0.2.1 dated 2009-12-09
DESCRIPTION | 16 ++++++++-------- R/mecdf.r | 44 +++++++++++++++++++++++++------------------- R/plot.r |only inst/doc/Makefile |only inst/doc/maia.sty |only inst/doc/mecdf.pdf |only inst/doc/mecdf.rnw |only man/bcdf.plot.Rd |only man/mecdf.Rd | 4 ++-- 9 files changed, 35 insertions(+), 29 deletions(-)
Author: Patrick Mair, Reinhold Hatzinger
Title: Extended Rasch Modeling.
Description: eRm fits Rasch models (RM), linear logistic test models
(LLTM), rating scale model (RSM), linear rating scale models
(LRSM), partial credit models (PCM), and linear partial credit
models (LPCM). Missing values are allowed in the data matrix.
Additional features are the ML estimation of the person
parameters, Andersen's LR-test, item-specific Wald test,
itemfit and personfit statistics including infit and outfit
measures, various ICC and related plots, automated stepwise
item elimination, simulation module for various binary data
matrices. An eRm platform is provided at R-forge (see URL).
Diff between eRm versions 0.10-2 dated 2009-03-06 and 0.11-0 dated 2009-12-09
eRm-0.10-2/eRm/inst |only eRm-0.11-0/eRm/COPYRIGHTS | 20 ++++++++--------- eRm-0.11-0/eRm/DESCRIPTION | 37 ++++++++++++++++++++------------ eRm-0.11-0/eRm/NAMESPACE | 9 ++++++- eRm-0.11-0/eRm/R/NPtest.R |only eRm-0.11-0/eRm/R/ROCR_aux.R |only eRm-0.11-0/eRm/R/performance.R |only eRm-0.11-0/eRm/R/performance_measures.R |only eRm-0.11-0/eRm/R/performance_plots.R |only eRm-0.11-0/eRm/R/plot.ppar.r | 14 ++++++++---- eRm-0.11-0/eRm/R/plotCI.R |only eRm-0.11-0/eRm/R/plotPImap.R | 2 - eRm-0.11-0/eRm/R/prediction.R |only eRm-0.11-0/eRm/R/zzz.R |only eRm-0.11-0/eRm/man/NPtest.Rd |only eRm-0.11-0/eRm/man/eRm-package.Rd | 8 ++++-- 16 files changed, 58 insertions(+), 32 deletions(-)
Author: Rory Michelland
Diff between OligoSpecificitySystem versions 1.0 dated 2009-11-26 and 1.1 dated 2009-12-09
More information about OligoSpecificitySystem at CRAN
Title: Oligo Specificity System
Description: Calculate the theorical specificity of a system of
multiple primers used for PCR, qPCR primers or degenerated
primer design
DESCRIPTION | 8 ++++----
R/OSS.r | 36 ++++++++++++++++++++++--------------
R/concatenate.r | 5 +++--
R/dbb1.r | 16 +++++++++++-----
R/dbb2.r | 16 ++++++++++------
R/dbb3.r | 15 ++++++++++-----
R/dbb4.r | 41 +++++++++++++++++++----------------------
R/waitGUI.r |only
inst/doc/db1.txt | 1 -
man/OSS-internal.rd | 1 +
10 files changed, 80 insertions(+), 59 deletions(-)
Permanent link
Author: Felix Wittmann
Diff between HFWutils versions 0.9.1.2008.05.28 dated 2008-07-06 and 0.9.3.2009.12.07 dated 2009-12-09
Title: csv import, csv export, garbage collection,string matching and
passing by reference
Description: package containing functions for convenient csv import and
export with a view of using R as a calculation back end to
spreadsheet-like programs such as scalc in open office; string
matching and passing by reference
DESCRIPTION | 30 ++++++++++++++++++------------
man/Clean-methods.Rd | 4 ++--
man/cleanTexts.Rd | 21 ++++++---------------
3 files changed, 26 insertions(+), 29 deletions(-)
Author: Michael Morrissey
Title: Functions to facilitate power and sensitivity analyses for
genetic studies of natrual popualtions
Description: More to come
Diff between pedantics versions 1.0 dated 2009-10-29 and 1.01 dated 2009-12-09
DESCRIPTION | 6 - R/drawPedigree.R | 52 +++++++++++---- R/pedigreeStats.R | 172 ++++++++++++++++++++++++++++++++++++++++----------- man/drawPedigree.Rd | 3 man/pedigreeStats.Rd | 6 + 5 files changed, 186 insertions(+), 53 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.08-04.04 dated 2009-12-03 and 0.08-04.06 dated 2009-12-09
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
R/mi.binary.R | 4 ++--
R/mi.continuous.R | 6 +++---
R/mi.count.R | 5 ++---
R/mi.info.R | 14 ++++++++++++--
R/mi.polr.R | 4 +---
7 files changed, 28 insertions(+), 17 deletions(-)
Author: Dimitris Rizopoulos
Diff between ltm versions 0.9-2 dated 2009-10-12 and 0.9-3 dated 2009-12-09
Title: Latent Trait Models under IRT
Description: Analysis of multivariate dichotomous and polytomous data
using latent trait models under the Item Response Theory
approach. It includes the Rasch, the Two-Parameter Logistic,
the Birnbaum's Three-Parameter, the Graded Response, and the
Generalized Partial Credit Models.
DESCRIPTION | 8 ++++----
R/IRT.parm.rasch.R | 2 +-
R/fitted.ltm.R | 2 ++
R/fitted.rasch.R | 2 ++
R/fitted.tpm.R | 2 ++
R/onAttach.R | 2 +-
R/summary.grm.R | 6 ++++++
R/summary.ltm.R | 4 ++--
R/summary.tpm.R | 2 +-
data/Abortion.rda |binary
data/Environment.rda |binary
data/LSAT.rda |binary
data/Mobility.rda |binary
data/Science.rda |binary
data/WIRS.rda |binary
inst/NEWS | 7 +++++++
man/ltm-package.Rd | 4 ++--
17 files changed, 30 insertions(+), 11 deletions(-)
Author: Rob J Hyndman and Han Lin Shang
Title: Functional time series analysis
Description: Functions for functional time series
Diff between ftsa versions 1.1 dated 2009-10-08 and 1.2 dated 2009-12-09
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- NAMESPACE | 4 +++- R/extract.time.R | 20 ++++++++++++++++---- R/extract.x.R | 22 +++++++++++++++++----- R/fplsrweightselect.R |only R/ftsmweightselect.R |only man/extract.Rd | 2 +- man/fplsrweightselect.Rd |only man/ftsmweightselect.Rd |only 10 files changed, 45 insertions(+), 15 deletions(-)
Author: Han Lin Shang and Rob J Hyndman
Title: Functional data sets
Description: Functional data sets
Diff between fds versions 1.2 dated 2009-11-03 and 1.3 dated 2009-12-09
CHANGELOG | 6 +++++- DESCRIPTION | 8 ++++---- data/ECBYieldcurve.rda |only data/FedYieldcurve.rda |only data/SOI.rda |only man/ECBYieldcurve.Rd |only man/FedYieldcurve.Rd |only man/SOI.Rd |only 8 files changed, 9 insertions(+), 5 deletions(-)
Author: Felix Kaminsky
Diff between estout versions 0.8-1 dated 2009-11-15 and 0.9-1 dated 2009-12-09
Title: Estimates Output
Description: The function collection stores the estimates of several
models and formats it to a table of the form estimate starred
and std.err. below. The default output is LaTeX but output to
CSV for later editing in a spreadsheet tool is possible as
well. It works for linear models (lm) and panel models from the
"plm"-package (plm). The added "descsto" and "desctab" enable
you to export descriptive statistics of data-frames and single
variables to LaTeX and CSV.
DESCRIPTION | 6 +-
R/esttab.R | 117 ++++++++++++++++++++++++++++++++++++++++++++++------------
man/esttab.Rd | 6 ++
3 files changed, 101 insertions(+), 28 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-19 dated 2009-08-10 and 0.9-22 dated 2009-12-09
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
R/epi.2by2.R | 2058 +++++++--------
R/epi.dms.R | 12
R/epi.dsl.R | 16
R/epi.iv.R | 15
R/epi.mh.R | 14
R/epi.prcc.R | 38
doc/epiR.pdf | 7619 +++++++++++++++++++++++++++-----------------------------
man/epi.2by2.Rd | 47
man/epi.dsl.Rd | 2
man/epi.iv.Rd | 2
man/epi.mh.Rd | 2
man/epi.prcc.Rd | 8
13 files changed, 4941 insertions(+), 4900 deletions(-)
Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some
standard tree-ring analyses.
Diff between dplR versions 1.2.1 dated 2009-12-02 and 1.2.2 dated 2009-12-09
DESCRIPTION | 8 ++++---- R/cms.R | 38 ++++++++++++++++++++++++++++++-------- inst/CITATION | 18 ++++++++++++++++++ man/cms.Rd | 18 +++++++++++++----- 4 files changed, 65 insertions(+), 17 deletions(-)
Author: Rolf Turner
Diff between deldir versions 0.0-10 dated 2009-11-16 and 0.0-11 dated 2009-12-09
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
Description: Calculates the Delaunay triangulation and the Dirichlet or
Voronoi tessellation (with respect to the entire plane) of a
planar point set.
ChangeLog | 14 ++++++++++++++
DESCRIPTION | 8 ++++----
R/First.R | 2 +-
3 files changed, 19 insertions(+), 5 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.30 dated 2009-11-09 and 4.31 dated 2009-12-09
caret-4.30/caret/R/makeCubistFiles.R |only caret-4.30/caret/inst/CHANGES |only caret-4.31/caret/DESCRIPTION | 12 ++++++---- caret-4.31/caret/NAMESPACE | 31 ++++++++++++++++++++++++++- caret-4.31/caret/R/rfe.R | 25 +++++++++++---------- caret-4.31/caret/R/selectByFilter.R |only caret-4.31/caret/inst/NEWS |only caret-4.31/caret/inst/doc/caretMisc.tex |only caret-4.31/caret/inst/doc/caretSelection.tex |only caret-4.31/caret/inst/doc/caretTrain.tex |only caret-4.31/caret/inst/doc/caretVarImp.tex |only caret-4.31/caret/man/nullModel.Rd |only caret-4.31/caret/man/rfeControl.Rd | 22 +++++++++---------- caret-4.31/caret/man/sbf.Rd |only caret-4.31/caret/man/sbfControl.Rd |only caret-4.31/caret/man/sbfFunctions.Rd |only 16 files changed, 61 insertions(+), 29 deletions(-)
Author: Sebastian Kaiser, Rodrigo Santamaria, Martin Sill, Roberto
Theron, Luis Quintales and Friedrich Leisch.
Title: BiCluster Algorithms
Description: The main function biclust provides several algorithms to
find biclusters in two-dimensional data: Cheng and Church,
Spectral, Plaid Model, Xmotifs and Bimax. In addition, the
package provides methods for data preprocessing (normalization
and discretisation), visualisation, and validation of bicluster
solutions.
Diff between biclust versions 0.8.1 dated 2009-05-07 and 0.9.1 dated 2009-12-09
DESCRIPTION | 15 ++--- NAMESPACE | 8 ++ NEWS | 2 R/aaa-biclust.r | 34 +++++++++++- R/bicorder.r |only R/bimax.r | 62 +++++++++++++++++++++- R/cc.r | 4 - R/clustmember.r | 135 +++++++++++++++++++++++++----------------------- R/jaccard.r | 28 +++++++++ R/parallelCoordinates.r | 32 +++++------ R/plaid.r | 28 ++++++++- R/predict.r |only R/questmetmotif.r |only R/questmotif.r | 4 - R/questordmotif.r |only R/spectral.r | 4 - R/xmotif.r | 4 - man/BCBimax.rd | 7 ++ man/BCQuest.rd | 15 ++++- man/Biclust.rd | 4 + man/BiclustMethod.rd | 4 - man/clustmember.rd | 40 ++++++++++---- man/coherence.Rd | 3 - man/discretize.rd | 3 - man/plotclust.rd | 2 man/predict.rd |only man/writeclust.rd | 4 - src/rbimax.c | 70 ++++++++++++------------ 28 files changed, 347 insertions(+), 165 deletions(-)
Author: Daniel Chessel, Anne-Beatrice Dufour
Diff between ade4 versions 1.4-13 dated 2009-11-03 and 1.4-14 dated 2009-12-09
Title: Analysis of Ecological Data : Exploratory and Euclidean methods
in Environmental sciences
Description: Multivariate data analysis and graphical display.
ChangeLog | 39 +++++++++
DESCRIPTION | 12 +-
R/betweencoinertia.R |only
R/costatis.R |only
R/plot.4thcorner.R | 39 ++++++---
R/s.match.class.R |only
R/statico.R |only
R/withincoinertia.R |only
man/area.plot.Rd | 7 -
man/betweencoinertia.Rd |only
man/costatis.Rd |only
man/dist.ktab.Rd | 9 +-
man/fourthcorner.Rd | 9 +-
man/neig.Rd | 6 -
man/oribatid.Rd | 4
man/s.match.class.Rd |only
man/statico.Rd |only
man/withincoinertia.Rd |only
man/woangers.Rd | 5 -
src/fourthcorner.c | 198 ++++++++++++++++++++++++++++++++++--------------
20 files changed, 234 insertions(+), 94 deletions(-)
Author: Jianqing Fan, Yang Feng, Richard Samworth, Yichao Wu
Title: Sure Independence Screening
Description: (Iterative) Sure Independence Screening for Generalized
Linear Models and Cox's Proportional Hazards Models
Diff between SIS versions 0.2 dated 2009-08-19 and 0.3 dated 2009-12-09
DESCRIPTION | 10 +++++----- man/COXvanISISscad.Rd | 1 + man/GLMvanISISscad.Rd | 1 + man/SIS.Rd | 1 + man/getfinalSCADcoef.Rd | 1 + man/getfinalSCADcoefCOX.Rd | 1 + man/scadcox.Rd | 1 + man/scadglm.Rd | 1 + man/wtlassocox.Rd | 1 + man/wtlassoglm.Rd | 1 + 10 files changed, 14 insertions(+), 5 deletions(-)
Author: Fabrice Colas
Title: Integrated methodology for the identification of homogeneous
profiles in data distribution
Description: Integrated set of tools and methods to identify
homogeneous profiles/subtypes in data distribution by cluster
analysis. It includes methods for data treatment and
pre-processing, repeated cluster analysis, model selection,
model reliability and reproducibility assessment, profiles
characterization and validation by visual and table summaries.
It applies particularly to the search for more homogeneous
profiles in cohort studies.
Diff between SDisc versions 1.17 dated 2009-11-05 and 1.18 dated 2009-12-09
DESCRIPTION | 10 - NAMESPACE | 2 R/SDisc.R | 477 ++++++++++++++++++++++++++++++------------------ inst |only man/SDData.Rd | 13 - man/SDDataSettings.Rd | 8 man/SDisc.Rd | 7 man/bestModel.Rd | 3 man/modelBasedEM.Rd | 4 man/plot.SDData.Rd | 10 - man/plot.SDStability.Rd | 3 man/plot.SDisc.Rd | 8 man/predict.SDData.Rd |only man/predict.SDisc.Rd | 6 man/print.SDCModel.Rd | 8 man/print.SDData.Rd | 6 man/print.SDisc.Rd | 3 man/print.bicTable.Rd | 3 man/summary.SDCModel.Rd | 4 man/summary.SDData.Rd | 10 - man/summary.SDisc.Rd | 7 man/summary.bicTable.Rd | 3 man/texTable.Rd | 8 man/write.SDisc.Rd | 4 24 files changed, 387 insertions(+), 220 deletions(-)
Author: Jon T. Schnute
Diff between PBSmodelling versions 2.51.168 dated 2009-11-25 and 2.55.175 dated 2009-12-09
Title: GUI Tools Made Easy: Interact with Models, Explore Data, Give
Dynamic Presentations
Description: PBS Modelling provides software to facilitate the design,
testing, and operation of computer models. It focuses
particularly on tools that make it easy to construct and edit a
customized graphical user interface (GUI). Although it depends
heavily on the R interface to the Tcl/Tk package, a user does
not need to know Tcl/Tk. The package contains examples that
illustrate models built with other R packages, including
PBSmapping, deSolve, PBSddesolve, and BRugs. It also serves as
a convenient prototype for building new R packages, along with
instructions and batch files to facilitate that process. The R
directory '.../library/PBSmodelling/doc' includes a complete
user guide PBSmodelling-UG.pdf. To use this package
effectively, please consult the guide.
DESCRIPTION | 8 ++++----
R/presentTalk.r | 40 ++++++++++++++++++++++++++++++----------
R/supportFuns.r | 9 +++++++++
inst/doc/ChangeLog.txt | 6 +++++-
inst/doc/DeveloperGuide.pdf |binary
inst/doc/PBSmodellingIntro.pdf |binary
inst/testWidgets/check.txt | 2 +-
man/openFile.Rd | 4 ++++
man/openUG.Rd |only
9 files changed, 53 insertions(+), 16 deletions(-)
Author: Jon T. Schnute, Rowan Haigh
Title: PBS ADMB
Description: R Support for ADMB (Automatic Differentiation Model
Builder)
Diff between PBSadmb versions 0.60.43 dated 2009-11-25 and 0.61.44 dated 2009-12-09
DESCRIPTION | 6 +++--- R/PBSadmb.r | 2 +- inst/doc/ChangeLog.txt | 4 ++++ 3 files changed, 8 insertions(+), 4 deletions(-)
Author: Andrew Parnell
Title: Bayesian chronologies via compound Poisson-Gamma processes.
Description: This package takes dating information to produce joint
chronological reconstructions for age-depth data. The package
allows for: radiocarbon and non-radiocarbon depths, thickness
errors, outlying dates, multiple calibration curves, and event
prediction. It also produces some pretty pictures, and writes
all output to files to allow for further analysis (eg
palaeoclimate reconstruction). There is a menu system for
users, as well as a command line interface for advanced and/or
batch processing.
Diff between Bchron versions 2.1 dated 2008-05-13 and 3.0 dated 2009-12-09
Bchron-2.1/Bchron/R/Bchronchangecalcurve.R |only Bchron-2.1/Bchron/R/Bchronloaddata.R |only Bchron-2.1/Bchron/R/Bchronplotdens.R |only Bchron-2.1/Bchron/R/Bchronplotter.R |only Bchron-2.1/Bchron/R/Bchronplotterdatesonly.r |only Bchron-2.1/Bchron/R/Bchronquickload.R |only Bchron-2.1/Bchron/R/BchronreadEPD.r |only Bchron-2.1/Bchron/data |only Bchron-2.1/Bchron/man/Bchronchangecalcurve.Rd |only Bchron-2.1/Bchron/man/Bchronloaddata.Rd |only Bchron-2.1/Bchron/man/Bchronplotdens.Rd |only Bchron-2.1/Bchron/man/Bchronplotter.Rd |only Bchron-2.1/Bchron/man/Bchronplotterdatesonly.Rd |only Bchron-2.1/Bchron/man/Bchronquickload.Rd |only Bchron-2.1/Bchron/man/BchronreadEPD.Rd |only Bchron-2.1/Bchron/man/GlendaloughEventDepthsAlnus.Rd |only Bchron-2.1/Bchron/man/Glendaloughddepths.Rd |only Bchron-2.1/Bchron/man/IntCal04.Rd |only Bchron-2.1/Bchron/man/hdr2.den.Rd |only Bchron-3.0/Bchron/DESCRIPTION | 33 +- Bchron-3.0/Bchron/NAMESPACE | 9 Bchron-3.0/Bchron/R/BchronMCMC.R | 137 +++----- Bchron-3.0/Bchron/R/Bchroncalibrate.R | 80 +--- Bchron-3.0/Bchron/R/Bchroncheck.R | 84 +---- Bchron-3.0/Bchron/R/Bchronconvergecheck.R | 42 -- Bchron-3.0/Bchron/R/Bchroncreatecalcurve.R |only Bchron-3.0/Bchron/R/Bchronload.R |only Bchron-3.0/Bchron/R/Bchronmenu.R | 312 +++++++++++-------- Bchron-3.0/Bchron/R/Bchronplot.R |only Bchron-3.0/Bchron/R/Bchronplotevent.R | 97 ++++- Bchron-3.0/Bchron/R/Bchronpredict.R | 88 ++--- Bchron-3.0/Bchron/R/Bchronpredictevent.R | 142 ++------ Bchron-3.0/Bchron/R/Bchronproxyplot.R |only Bchron-3.0/Bchron/R/hdr2.den.R | 1 Bchron-3.0/Bchron/R/newgraphwindow.R | 8 Bchron-3.0/Bchron/R/zzz.R |only Bchron-3.0/Bchron/inst |only Bchron-3.0/Bchron/man/Bchron-package.Rd | 188 +++++------ Bchron-3.0/Bchron/man/BchronMCMC.Rd | 62 ++- Bchron-3.0/Bchron/man/Bchroncalibrate.Rd | 52 ++- Bchron-3.0/Bchron/man/Bchroncheck.Rd | 26 + Bchron-3.0/Bchron/man/Bchronconvergecheck.Rd | 38 +- Bchron-3.0/Bchron/man/Bchroncreatecalcurve.Rd |only Bchron-3.0/Bchron/man/Bchronload.Rd |only Bchron-3.0/Bchron/man/Bchronmenu.Rd | 38 +- Bchron-3.0/Bchron/man/Bchronplot.Rd |only Bchron-3.0/Bchron/man/Bchronplotevent.Rd | 59 +++ Bchron-3.0/Bchron/man/Bchronpredict.Rd | 44 ++ Bchron-3.0/Bchron/man/Bchronpredictevent.Rd | 52 ++- Bchron-3.0/Bchron/man/Bchronproxyplot.Rd |only Bchron-3.0/Bchron/man/newgraphwindow.Rd | 15 Bchron-3.0/Bchron/src/CPGv2.c | 69 +--- Bchron-3.0/Bchron/src/calibrate.c | 62 --- Bchron-3.0/Bchron/src/predict.c | 103 +----- Bchron-3.0/Bchron/src/predictrand.c | 69 +--- 55 files changed, 928 insertions(+), 982 deletions(-)
Author: Thomas Lumley, Achim Zeileis
Title: Robust Covariance Matrix Estimators
Description: Model-robust standard error estimators for
cross-sectional, time series and longitudinal data.
Diff between sandwich versions 2.2-3 dated 2009-11-30 and 2.2-4 dated 2009-12-07
DESCRIPTION | 8 ++++---- NAMESPACE | 3 +++ NEWS | 7 +++++++ R/vcovHC.R | 44 ++++++++++++++++++++++++++++++++++++++++++++ inst/doc/sandwich-OOP.pdf |binary inst/doc/sandwich.pdf |binary man/vcovHC.Rd | 1 + 7 files changed, 59 insertions(+), 4 deletions(-)
Author: Torsten Hothorn, Achim Zeileis, Giovanni Millo, David Mitchell
Title: Testing Linear Regression Models
Description: A collection of tests, data sets and examples for
diagnostic checking in linear regression models.
Diff between lmtest versions 0.9-25 dated 2009-11-17 and 0.9-26 dated 2009-12-07
DESCRIPTION | 8 ++++---- NAMESPACE | 1 + NEWS | 6 ++++++ R/coeftest.R | 12 ++++++++++++ inst/doc/lmtest-intro.pdf |binary man/coeftest.Rd | 1 + 6 files changed, 24 insertions(+), 4 deletions(-)
Author: Edzer J. Pebesma
Diff between sp versions 0.9-47 dated 2009-11-20 and 0.9-51 dated 2009-12-07
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
sp-0.9-47/sp/.Rbuildindex.19095 |only
sp-0.9-47/sp/rlabs |only
sp-0.9-51/sp/ChangeLog | 27
sp-0.9-51/sp/DESCRIPTION | 8
sp-0.9-51/sp/R/Spatial-methods.R | 6
sp-0.9-51/sp/R/chfids.R | 20
sp-0.9-51/sp/inst/ChangeLog | 27
sp-0.9-51/sp/inst/doc/sp.pdf | 3636 ++++++++++++++++++-------------------
sp-0.9-51/sp/man/Spatial-class.Rd | 4
sp-0.9-51/sp/tests/fail1.Rout.save | 3
10 files changed, 1898 insertions(+), 1833 deletions(-)
Author: Werner Stahel, Martin Maechler and potentially others
Title: eXperimental eXtraneous eXtraordinary ... Functionality for
Robust Statistics
Description: eXperimental eXtraneous eXtraordinary Functionality for
Robust Statistics
Diff between robustX versions 1.1-1 dated 2009-11-18 and 1.1-2 dated 2009-12-07
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- R/BACON-alg.R | 9 +++------ 3 files changed, 11 insertions(+), 10 deletions(-)
Author: Timothy H. Keitt
Diff between rgdal versions 0.6-22 dated 2009-12-03 and 0.6-23 dated 2009-12-07
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
ChangeLog | 13 +++++++++++--
DESCRIPTION | 8 ++++----
R/sgdf_gdal.R | 7 ++-----
inst/ChangeLog | 13 +++++++++++--
man/SpatialGDAL-class.Rd | 4 ++--
5 files changed, 30 insertions(+), 15 deletions(-)
Author: Graham Williams
Diff between rattle versions 2.5.7 dated 2009-11-29 and 2.5.11 dated 2009-12-07
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
DESCRIPTION | 8 -
R/data.R | 189 ++++++++++++++++++++++++++++++++++---------
R/evaluate.R | 216 ++++++++++++++++++++------------------------------
R/help.R | 39 ++++++++-
R/kmeans.R | 22 ++++-
R/model.R | 35 ++++----
R/nnet.R | 8 -
R/projects.R | 59 ++++++-------
R/rattle.R | 35 ++++----
R/textminer.R | 5 -
R/zzz.R | 6 +
inst/etc/rattle.glade | 73 ++++++++++++----
man/internal.Rd | 3
13 files changed, 433 insertions(+), 265 deletions(-)
Author: Christophe Genolini
Diff between r2lUniv versions 0.9.3 dated 2009-10-11 and 0.9.4 dated 2009-12-07
Title: R to LaTeX, Univariate analysis
Description: This package provide facilities to export some R analysis
in a LaTeX format. Working either on a single variable or on a
data.frame, it compute several statistics (frequency,
centrality, dispersion, graph) for each variable, according to
their nature.
DESCRIPTION | 8
R/function.R | 80 +++-
R/rtlu.R | 139 +++++---
man/r2lUniv-package.Rd | 4
man/rtlu.Rd | 47 +-
man/rtluMainFile.Rd | 19 -
testsDev/V-barplot.png |only
testsDev/V-hist.png |only
testsDev/a.tex |only
testsDev/b.tex |only
testsDev/c.tex |only
testsDev/d.tex |only
testsDev/e.tex |only
testsDev/exampleSingle |only
testsDev/f.tex |only
testsDev/graphUniv |only
testsDev/main.tex |only
testsDev/nameEssai-barplot.png |only
testsDev/testsFunction.r |only
testsDev/testsRtlu.r | 683 +----------------------------------------
20 files changed, 212 insertions(+), 768 deletions(-)
Author: Graham Williams, Michael Hahsler (arules), Zementis Inc, Hemant
Ishwaran, Udaya B. Kogalur, Rajarshi Guha
Title: Generate PMML for various models
Description: The Predictive Modelling Markup Language (PMML) is a
language for representing models, in an application independent
way. Such models can then be loaded into other applications
supporting PMML, including ADAPA from Zementis, Teradata
Warehouse Miner and IBM's DB2. The package provides a generic
pmml function to generate pmml for an object. Using a S3
generic function the approriate method for the class of the
supplied object is dispatched. The package currently supports
the export of PMML for linear regression, SVMs, rpart
classification trees, randomSurvivalForest forest models, and
kmeans clusters. This package is part of the Rattle toolkit.
Diff between pmml versions 1.2.20 dated 2009-11-04 and 1.2.21 dated 2009-12-07
DESCRIPTION | 8 NAMESPACE | 1 R/pmml.R | 12 - R/pmml.coxph.R | 10 - R/pmml.lm.R | 3 R/pmml.nnet.R | 498 ++++++++++++++++++++++++++++++------------------------- R/pmml.survreg.R |only 7 files changed, 296 insertions(+), 236 deletions(-)
Author: Kaspar Rufibach
Diff between logcondens versions 1.3.4 dated 2009-06-05 and 1.3.5 dated 2009-12-07
Title: Estimate a Log-Concave Probability Density from iid Observations
Description: Given independent and identically distributed observations
X(1), ..., X(n), this package allows to compute a concave,
piecewise linear function phi on [X(1), X(n)] with knots only
in {X(1), X(2), ..., X(n)} such that L(phi) = sum_{i=1}^n
W(i)*phi(X(i)) - int_{X(1)}^{X(n)} exp(phi(x)) dx is maximal,
for some weights W(1), ..., W(n) s.t. sum_{i=1}^n W(i) = 1.
According to the results in Duembgen and Rufibach (2009), this
function phi maximizes the ordinary log-likelihood sum_{i=1}^n
W(i)*phi(X(i)) under the constraint that phi is concave. The
corresponding function exp(phi) is a log-concave probability
density. Two algorithms are offered to compute the estimator:
An active set algorithm and one based on the
pool-adjacent-violaters algorithm. In addition, we provide
functions to compute (1) the value of the density and
distribution function estimate at a given point (2) a smoothed
log-concave density estimator (3) the characterizing functions
of the estimator and (4) to sample from the estimated
distribution. Finally, two datasets that have been used to
illustrate log-concave density estimation are made available.
logcondens-1.3.4/logcondens/R/intECDF.r |only
logcondens-1.3.4/logcondens/R/intF.r |only
logcondens-1.3.5/logcondens/CHANGES | 6 +++++
logcondens-1.3.5/logcondens/DESCRIPTION | 19 ++++++++++++------
logcondens-1.3.5/logcondens/R/J00.R | 2 -
logcondens-1.3.5/logcondens/R/J10.R | 2 -
logcondens-1.3.5/logcondens/R/J11.R | 2 -
logcondens-1.3.5/logcondens/R/J20.R | 2 -
logcondens-1.3.5/logcondens/R/Lhat_eta.R | 2 -
logcondens-1.3.5/logcondens/R/LocalCoarsen.R | 2 -
logcondens-1.3.5/logcondens/R/LocalConvexity.R | 2 -
logcondens-1.3.5/logcondens/R/LocalExtend.R | 2 -
logcondens-1.3.5/logcondens/R/LocalF.R | 2 -
logcondens-1.3.5/logcondens/R/LocalMLE.R | 2 -
logcondens-1.3.5/logcondens/R/LocalNormalize.R | 2 -
logcondens-1.3.5/logcondens/R/Local_LL.R | 2 -
logcondens-1.3.5/logcondens/R/Local_LL_all.R | 2 -
logcondens-1.3.5/logcondens/R/MLE.R | 2 -
logcondens-1.3.5/logcondens/R/activeSetLogCon.R | 2 -
logcondens-1.3.5/logcondens/R/etaphi.R | 2 -
logcondens-1.3.5/logcondens/R/evaluateLogConDens.R | 2 -
logcondens-1.3.5/logcondens/R/icmaLogCon.R | 2 -
logcondens-1.3.5/logcondens/R/intECDF.R |only
logcondens-1.3.5/logcondens/R/intF.R |only
logcondens-1.3.5/logcondens/R/isoMean.R | 2 -
logcondens-1.3.5/logcondens/R/logconSmoothed.R |only
logcondens-1.3.5/logcondens/R/phieta.R | 2 -
logcondens-1.3.5/logcondens/R/qloglin.R | 2 -
logcondens-1.3.5/logcondens/R/quadDeriv.R | 2 -
logcondens-1.3.5/logcondens/R/quantilesLogConDens.R | 4 +--
logcondens-1.3.5/logcondens/R/rlogcon.R |only
logcondens-1.3.5/logcondens/R/robust.R | 2 -
logcondens-1.3.5/logcondens/data |only
logcondens-1.3.5/logcondens/inst/doc/logcondens.pdf |binary
logcondens-1.3.5/logcondens/man/brightstar.Rd |only
logcondens-1.3.5/logcondens/man/logconSmoothed.Rd |only
logcondens-1.3.5/logcondens/man/logcondens-package.Rd | 4 +--
logcondens-1.3.5/logcondens/man/reliability.Rd |only
logcondens-1.3.5/logcondens/man/rlogcon.Rd |only
39 files changed, 46 insertions(+), 33 deletions(-)
Author: Lisha Chen
Diff between MTSKNN versions 0.0-2 dated 2009-11-02 and 0.0-4 dated 2009-12-07
Title: Multivariate two-sample tests based on K-nearest-neighbors
Description: The package contains four multivariate two-sample tests
which are all based on k-nearest-neighbors. The testing
procedures are distribution free and are robust from balanced
designs to unbalanced designs.
DESCRIPTION | 14 +--
NAMESPACE | 2
R/func.R |only
R/mtsknn.discard.R |only
R/mtsknn.eq.R | 142 +++++++++++++++++++++-------------
R/mtsknn.neq.R | 203 ++++++++++++++++++++++++++++++++------------------
man/mtsknn.Rd | 2
man/mtsknn.discard.Rd |only
man/mtsknn.eq.Rd | 10 +-
man/mtsknn.neq.Rd | 22 ++++-
10 files changed, 250 insertions(+), 145 deletions(-)
Author: Michael D. Sumner
Title: Spatial analysis of animal track data
Description: Functions for accessing and manipulating spatial data for
animal tracking. Filter for speed and create time spent plots
from animal track data.
Diff between trip versions 1.1-3 dated 2009-10-12 and 1.1-4 dated 2009-12-06
ChangeLog |only DESCRIPTION | 6 +-- R/trip.R | 98 ++++++++++++++++++++++++++++++------------------------------ 3 files changed, 52 insertions(+), 52 deletions(-)
Author: Fortran original by Leo Breiman and Adele Cutler, R port by
Andy Liaw and Matthew Wiener.
Title: Breiman and Cutler's random forests for classification and
regression
Description: Classification and regression based on a forest of trees
using random inputs.
Diff between randomForest versions 4.5-33 dated 2009-10-18 and 4.5-34 dated 2009-12-06
DESCRIPTION | 8 ++++---- NEWS |only R/margin.R | 2 +- R/randomForest.default.R | 2 +- R/zzz.R | 6 +++--- inst/NEWS | 6 ++++++ man/getTree.Rd | 6 +++--- man/predict.randomForest.Rd | 3 +++ man/randomForest.Rd | 3 +++ 9 files changed, 24 insertions(+), 12 deletions(-)
Author: Ian Taylor, Ian Stewart, Tommy Garrison, Andre Punt, John
Wallace, and other contributors
Title: R code for Stock Synthesis
Description: Functions for reading output, plotting, exploring and
manipulating input files for Richard Methot's Stock Synthesis
fisheries stock assessment modeling platform.
Diff between r4ss versions 1.01 dated 2009-11-16 and 1.02 dated 2009-12-06
DESCRIPTION | 8 R/SS_changepars.R | 7 R/SS_fitbiasramp.R | 30 R/SS_parlines.R | 5 R/SSv3_output.R | 58 + R/SSv3_plotpars.R | 22 R/SSv3_plots.R | 1385 ++++++++++++++++++++++++--------------------- inst/doc/r4ss_vignette.pdf |binary man/SS_parlines.Rd | 13 man/r4ss-package.Rd | 4 10 files changed, 839 insertions(+), 693 deletions(-)
Author: Eva Herrmann
Diff between plugdensity versions 0.8-1 dated 2004-11-03 and 0.8-2 dated 2009-12-06
Title: Plug-in Kernel Density Estimation
Description: Kernel density estimation with global bandwidth selection
via "plug-in".
ChangeLog |only
DESCRIPTION | 16 +++++++++-------
tests/ex.Rout.save | 9 +++++----
3 files changed, 14 insertions(+), 11 deletions(-)
Author: Wolfgang Viechtbauer
Diff between metafor versions 0.5-5 dated 2009-10-08 and 0.5-7 dated 2009-12-06
Title: Meta-Analysis Package for R
Description: The metafor package consists of a collection of functions
for conducting meta-analyses in R. Fixed- and random-effects
models (with and without moderators) can be fitted via the
general linear (mixed-effects) model. For 2x2 table data, the
Mantel-Haenszel and Peto's method are also implemented.
DESCRIPTION | 8
NAMESPACE | 2
NEWS | 27 +
R/metafor.R | 825 +++++++++++++++++++++++++----------------
man/addpoly.Rd | 4
man/addpoly.default.Rd | 4
man/addpoly.rma.Rd | 4
man/anova.rma.uni.Rd | 6
man/blup.Rd | 4
man/blup.rma.uni.Rd | 6
man/cint.Rd | 4
man/cint.rma.uni.Rd | 4
man/coef.rma.Rd | 4
man/cumul.Rd | 4
man/cumul.rma.mh.Rd | 6
man/cumul.rma.uni.Rd | 4
man/dat.bcg.Rd | 2
man/fitstats.Rd | 4
man/fitstats.rma.Rd | 4
man/fitted.rma.Rd | 4
man/forest.Rd | 4
man/forest.default.Rd | 4
man/forest.rma.Rd | 4
man/forest.rma.cumul.Rd | 4
man/funnel.Rd | 4
man/funnel.rma.Rd | 4
man/hatvalues.rma.uni.Rd | 4
man/influence.rma.uni.Rd | 24 -
man/leave1out.Rd | 4
man/leave1out.rma.mh.Rd | 6
man/leave1out.rma.uni.Rd | 4
man/logLik.rma.Rd | 4
man/metafor-package.Rd | 9
man/metafor.news.Rd |only
man/permutest.Rd |only
man/permutest.rma.uni.Rd |only
man/plot.infl.rma.uni.Rd | 14
man/plot.rma.uni.Rd | 8
man/predict.rma.uni.Rd | 6
man/print.anova.rma.uni.Rd | 4
man/print.fsn.Rd | 4
man/print.infl.rma.uni.Rd | 4
man/print.list.rma.Rd | 4
man/print.permutest.rma.uni.Rd |only
man/print.ranktest.rma.Rd | 4
man/print.regtest.rma.Rd | 4
man/print.rma.uni.Rd | 10
man/qqnorm.rma.uni.Rd | 8
man/radial.Rd | 6
man/radial.rma.Rd | 4
man/ranktest.Rd | 4
man/ranktest.rma.Rd | 4
man/regtest.Rd | 4
man/regtest.rma.Rd | 4
man/residuals.rma.Rd | 16
man/rma.mh.Rd | 2
man/rma.peto.Rd | 2
man/rma.uni.Rd | 10
man/transf.Rd | 16
man/trimfill.Rd | 4
man/trimfill.rma.uni.Rd | 4
man/vcov.rma.Rd | 4
62 files changed, 700 insertions(+), 463 deletions(-)
Author: Hrishikesh D. Vinod
Diff between meboot versions 1.0-2 dated 2009-11-20 and 1.1-1 dated 2009-12-06
Title: Maximum Entropy Bootstrap for Time Series
Description: This package performs maximum entropy density based
dependent data bootstrap. An algorithm is provided to create a
population of time series (ensemble) without assuming
stationarity. The reference paper (Vinod, H.D., 2004) explains
how the algorithm satisfies the ergodic theorem and the central
limit theorem.
meboot-1.0-2/meboot/inst/doc/airp1.pdf |only
meboot-1.0-2/meboot/inst/doc/jss.bst |only
meboot-1.0-2/meboot/inst/doc/jss.cls |only
meboot-1.0-2/meboot/inst/doc/meboot.Rnw |only
meboot-1.0-2/meboot/inst/doc/meboot.bib |only
meboot-1.0-2/meboot/inst/doc/t5ex.pdf |only
meboot-1.0-2/meboot/inst/doc/t5ex_density.pdf |only
meboot-1.1-1/meboot/DESCRIPTION | 8 ++--
meboot-1.1-1/meboot/R/checkConv.R | 47 ++++++++++++++------------
meboot-1.1-1/meboot/inst/doc/meboot.pdf |binary
meboot-1.1-1/meboot/man/checkConv.Rd | 13 +++----
11 files changed, 37 insertions(+), 31 deletions(-)
Author: Burkhardt Seifert
Diff between lpridge versions 1.0-4 dated 2007-06-25 and 1.0-5 dated 2009-12-06
Title: Local Polynomial (Ridge) Regression
Description: Local Polynomial Regression with Ridging.
DESCRIPTION | 12 +++++++-----
1 file changed, 7 insertions(+), 5 deletions(-)
Author: Christian Roever, Nils Raabe, Karsten Luebke, Uwe Ligges, Gero
Szepannek, Marc Zentgraf
Title: Classification and visualization
Description: Miscellaneous functions for classification and
visualization developed at the Fakultaet Statistik, Technische
Universitaet Dortmund
Diff between klaR versions 0.6-1 dated 2009-11-16 and 0.6-2 dated 2009-12-06
Changes-ToDo | 5 + DESCRIPTION | 8 +- R/predict.NaiveBayes.R | 143 +++++++++++++++++++++++++++------------------- inst/CITATION | 42 ++++++------- man/NaiveBayes.Rd | 2 man/b.scal.Rd | 2 man/benchB3.Rd | 2 man/calc.trans.Rd | 2 man/centerlines.Rd | 2 man/classscatter.Rd | 2 man/dkernel.Rd | 2 man/drawparti.Rd | 2 man/e.scal.Rd | 2 man/greedy.wilks.Rd | 2 man/kmodes.Rd | 2 man/loclda.Rd | 2 man/meclight.Rd | 2 man/nm.Rd | 2 man/partimat.Rd | 2 man/plineplot.Rd | 2 man/plot.NaiveBayes.Rd | 2 man/predict.NaiveBayes.Rd | 2 man/predict.loclda.Rd | 2 man/predict.meclight.Rd | 2 man/predict.sknn.Rd | 2 man/predict.svmlight.Rd | 2 man/quadplot.Rd | 2 man/quadtrafo.Rd | 2 man/sknn.Rd | 2 man/svmlight.Rd | 2 man/ucpm.Rd | 2 31 files changed, 142 insertions(+), 110 deletions(-)
Author: Dirk Eddelbuettel
Diff between digest versions 0.4.1 dated 2009-09-24 and 0.4.2 dated 2009-12-06
Title: Create cryptographic hash digests of R objects
Description: The digest package provides functions for the creation of
`hash' digests of arbitrary R objects using the md5, sha-1,
sha-256 and crc32 algorithms permitting easy comparison of R
language objects. The md5 algorithm by Ron Rivest is specified
in RFC 1321, the SHA-1 and SHA-256 algorithms are specified in
FIPS-180-1 and FIPS-180-2, and the crc32 algorithm is described
in ftp://ftp.rocksoft.com/cliens/rocksoft/papers/crc_v3.txt.
For md5, sha-1 and sha-256, this packages uses small standalone
implementations that were provided by Christophe Devine. For
crc32, code from the zlib library is used.
Please note that this package is not meant to be deployed for
cryptographic purposes for which more comprehensive (and widely
tested) libraries such as OpenSSL should be used.
DESCRIPTION | 12 +++++++-----
R/digest.R | 9 ++++++---
inst/ChangeLog | 9 +++++++++
3 files changed, 22 insertions(+), 8 deletions(-)
Author: Pin T. Ng
Diff between cobs99 versions 0.9-8 dated 2009-11-03 and 0.9-9 dated 2009-12-06
Title: Constrained B-splines -- outdated 1999 version
Description: Qualitatively Constrained (Regression) Smoothing via
Linear Programming. OUTDATED version based on He & Ng (1999),
the modified "non-simplex" algorithm of Bartels and Conn
(1980).
ChangeLog | 6 ++++++
DESCRIPTION | 8 ++++----
R/l1looDesign.R | 2 +-
tests/small-ex.Rout.save | 4 ++--
4 files changed, 13 insertions(+), 7 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 1.03 dated 2009-11-05 and 1.05 dated 2009-12-06
bipartite-1.03/bipartite/R/functspec.r |only bipartite-1.03/bipartite/man/functspec.Rd |only bipartite-1.05/bipartite/DESCRIPTION | 8 ++++---- bipartite-1.05/bipartite/R/specieslevel.R | 13 ++++++------- bipartite-1.05/bipartite/R/zzz.R | 6 ------ bipartite-1.05/bipartite/inst/CITATION | 10 +++++----- bipartite-1.05/bipartite/man/PAC.rd | 2 +- bipartite-1.05/bipartite/man/as.one.mode.Rd | 2 +- bipartite-1.05/bipartite/man/bipartite-package.Rd | 17 ++++++++++++----- 9 files changed, 29 insertions(+), 29 deletions(-)
Author: Original by F.L. Ramsey and D.W. Schafer, modifications by
Daniel W Schafer, Jeannie Sifneos and Berwin A Turlach
Title: Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd
ed)"
Description: Data sets from Ramsey, F.L. and Schafer, D.W. (2002), "The
Statistical Sleuth: A Course in Methods of Data Analysis (2nd
ed)" Duxbury.
Diff between Sleuth2 versions 1.0-0 dated 2009-11-13 and 1.0-1 dated 2009-12-06
DESCRIPTION | 10 +++++----- R |only inst |only man/Sleuth2-package.Rd |only man/Sleuth2Manual.Rd |only 5 files changed, 5 insertions(+), 5 deletions(-)
Author: Matthias Burger
Diff between RUnit versions 0.4.22 dated 2009-04-24 and 0.4.25 dated 2009-12-06
Title: R Unit test framework
Description: R functions implementing a standard Unit Testing
framework, with additional code inspection and report
generation tools
RUnit-0.4.22/RUnit/tests/runitHTMLProtocol.r |only
RUnit-0.4.22/RUnit/tests/runitInspect.r |only
RUnit-0.4.22/RUnit/tests/runitPlotConnection.r |only
RUnit-0.4.22/RUnit/tests/runitRUnit.r |only
RUnit-0.4.22/RUnit/tests/runitS4.r |only
RUnit-0.4.22/RUnit/tests/runitSetUp.r |only
RUnit-0.4.22/RUnit/tests/runitTearDown.r |only
RUnit-0.4.22/RUnit/tests/runitTextProtocol.r |only
RUnit-0.4.25/RUnit/ChangeLog | 1632 +++-----------
RUnit-0.4.25/RUnit/DESCRIPTION | 10
RUnit-0.4.25/RUnit/NEWS | 27
RUnit-0.4.25/RUnit/R/00Init.r | 38
RUnit-0.4.25/RUnit/R/checkFuncs.r | 42
RUnit-0.4.25/RUnit/R/html.r | 4
RUnit-0.4.25/RUnit/R/htmlProtocol.r | 15
RUnit-0.4.25/RUnit/R/options.r |only
RUnit-0.4.25/RUnit/R/runit.r | 101
RUnit-0.4.25/RUnit/R/testLogger.r | 130 -
RUnit-0.4.25/RUnit/R/textProtocol.r | 84
RUnit-0.4.25/RUnit/inst/doc/RUnit.Rnw | 14
RUnit-0.4.25/RUnit/inst/doc/RUnit.dvi |binary
RUnit-0.4.25/RUnit/inst/doc/RUnit.pdf |binary
RUnit-0.4.25/RUnit/inst/doc/RUnit.ps | 182 -
RUnit-0.4.25/RUnit/inst/doc/RUnit.tex | 16
RUnit-0.4.25/RUnit/inst/examples/runitVirtualClassTest.r | 4
RUnit-0.4.25/RUnit/inst/examples/runitVirtualClassTest2.r | 2
RUnit-0.4.25/RUnit/inst/examples/runitc2f.r | 4
RUnit-0.4.25/RUnit/inst/share/R/checkCode.r | 14
RUnit-0.4.25/RUnit/inst/share/R/compareRUnitTestData.r | 10
RUnit-0.4.25/RUnit/inst/unitTests |only
RUnit-0.4.25/RUnit/man/RUnit-intro.Rd | 28
RUnit-0.4.25/RUnit/man/RUnit-options.Rd |only
RUnit-0.4.25/RUnit/man/checkFuncs.Rd | 64
RUnit-0.4.25/RUnit/man/inspect.Rd | 8
RUnit-0.4.25/RUnit/man/printHTML.trackinfo.Rd | 15
RUnit-0.4.25/RUnit/man/runit.Rd | 61
RUnit-0.4.25/RUnit/man/testCaseSetUp.Rd |only
RUnit-0.4.25/RUnit/man/textProtocol.Rd | 14
RUnit-0.4.25/RUnit/man/tracker.Rd | 8
RUnit-0.4.25/RUnit/tests/README |only
RUnit-0.4.25/RUnit/tests/runUnitTests.r |only
41 files changed, 876 insertions(+), 1651 deletions(-)
Author: TISEAN authors: Rainer Hegger, Holger Kantz, Thomas Schreiber.
R interface code by Antonio, Fabio Di Narzo, R documentation
and examples by Gianluca Gazzola
Title: R interface to Tisean algorithms
Description: Algorithms for time series analysis from nonlinear
dynamical systems theory originally made available by Rainer
Hegger, Holger Kantz and Thomas Schreiber at the site
http://www.mpipks-dresden.mpg.de/~tisean/ . A related R
package (tseriesChaos by Antonio, Fabio Di Narzo) contains
rewritten versions of a few of the TISEAN algorithms. The
intention of the present package is to use the TISEAN routines
from within R with no need of manual importing/exporting. It
is in a beta version state, though most of the functions should
be usable. Correspondence should be sent to either Marji
Lines, lines@dss.uniud.it, or to the current maintainer of the
package. This package only contains R interface code. It
requires that you have the Tisean-3.0.1 algorithms available on
your computer.
Diff between RTisean versions 3.0.10 dated 2009-02-09 and 3.0.11 dated 2009-12-06
ChangeLog | 8 +++++++- DESCRIPTION | 40 +++++++++++++++++++++++++++++----------- R/lfo-run.r | 34 +++++++++++++++++----------------- man/av_d2.Rd | 1 - man/poincare.Rd | 1 - 5 files changed, 53 insertions(+), 31 deletions(-)
Author: Daniela Witten and Rob Tibshirani and Sam Gross
Title: Penalized Multivariate Analysis
Description: Performs Penalized Multivariate Analysis: a penalized
matrix decomposition, sparse principal components analysis, and
sparse canonical correlation analysis, described in the
following papers: (1) Witten, Tibshirani and Hastie (2009) A
penalized matrix decomposition, with applications to sparse
principal components and canonical correlation analysis.
Biostatistics 10(3):515-534. (2) Witten and Tibshirani (2009)
Extensions of sparse canonical correlation analysis, with
applications to genomic data. Statistical Applications in
Genetics and Molecular Biology 8(1): Article 28.
Diff between PMA versions 1.0.4 dated 2009-10-22 and 1.0.5 dated 2009-12-06
DESCRIPTION | 8 ++--- R/CCA.R | 8 ++--- R/PMD.R | 55 +++++++++++++++++++++++++------------- man/CCA.Rd | 82 ++++++++++++++++++++++++++++++---------------------------- man/SPC.Rd | 7 +++- man/SPC.cv.Rd | 4 +- 6 files changed, 94 insertions(+), 70 deletions(-)
Author: Marko Robnik-Sikonja
Diff between CORElearn versions 0.9.22 dated 2009-09-20 and 0.9.24 dated 2009-12-06
Title: CORElearn - classification, regression, feature evaluation and
ordinal evaluation
Description: CORElearn is machine learning suite ported to R from
standalone C++ package. It contains several model learning
techniques in classification and regression, for example
classification and regression trees with optional constructive
induction and models in the leafs, random forests, kNN, naive
Bayes, and locally weighted regression. It is especially strong
in feature evaluation algorithms where it contains several
variants of Relief algorithm and many impurity based attribute
evaluation functions, e.g., Gini, information gain, MDL, DKM,
... Its additional strength is ordEval algorithm and its
visualization used for ordinal features and class. The top
level documentation is reachable through ?CORElearn.
COPYING | 29 ++++-----
ChangeLog | 3
DESCRIPTION | 12 +--
NAMESPACE | 2
R/Rinterface.R | 12 +--
R/init.R | 4 -
R/ordEval.R | 139 ++++++++++++++++++++++++++++++++++++----------
R/util.R | 42 ++++++++-----
gpl-3.0-standalone.html |only
man/CORElearn-internal.Rd | 2
man/CORElearn-package.Rd | 4 -
man/CoreModel.Rd | 6 -
man/attrEval.Rd | 4 -
man/infoCore.Rd | 2
man/optionCore.Rd | 13 ++--
man/ordEval.Rd | 4 -
man/paramCoreIO.Rd | 2
man/plot.ordEval.Rd | 17 +++--
man/predict.CoreModel.Rd | 4 -
man/preparePlot.Rd | 15 +++-
src/Rconvert.cpp | 7 +-
src/frontend.cpp | 21 +++---
src/utils.h | 6 -
23 files changed, 232 insertions(+), 118 deletions(-)
Author: Marc J. Mazerolle
Diff between AICcmodavg versions 1.04 dated 2009-11-12 and 1.05 dated 2009-12-06
Title: Model selection and multimodel inference based on (Q)AIC(c)
Description: This package includes functions to create model selection
tables based on Akaike's information criterion (AIC) and the
second-order AIC (AICc), as well as their quasi-likelihood
counterparts (QAIC, QAICc). Tables are printed with delta AIC
and Akaike weights. The package also includes functions to
conduct model averaging (multimodel inference) for a given
parameter of interest or predicted values. Other handy
functions enable the computation of relative variable
importance, evidence ratios, and confidence sets for the best
model. The present version works with linear models ('lm'
class), generalized linear models ('glm' class), linear mixed
models ('lme' class), multinomial and ordinal logistic
regressions ('multinom' and 'polr' classes).
DESCRIPTION | 8 +-
R/AICc.glm.R | 2
R/AICc.mult.R | 2
R/aictab.R | 29 ++++++++--
R/aictab.glm.R | 37 ++++++++----
R/aictab.lme.R | 22 ++++++-
R/aictab.mult.R | 46 ++++++++++-----
R/aictab.polr.R | 18 ++++--
R/confset.R | 2
R/importance.R | 4 -
R/modavg.R | 38 +++++++------
R/modavg.glm.R | 14 +++-
R/modavg.lme.R | 133 +++++++++++++++++++++++++++++++++++++---------
R/modavg.mult.R | 22 +++++--
R/modavg.polr.R | 89 +++++++++++++++++-------------
man/AICc.Rd | 18 +++---
man/AICcmodavg-package.Rd | 4 -
man/aictab.Rd | 52 ++++++++++-------
man/c_hat.Rd | 14 +++-
man/confset.Rd | 38 ++++++-------
man/evidence.Rd | 33 +++++------
man/importance.Rd | 10 +--
man/modavg.Rd | 58 ++++++++++----------
man/modavgpred.Rd | 38 ++++++-------
24 files changed, 464 insertions(+), 267 deletions(-)
Author: Michael A. Lawrence
Title: Easy analysis and visualization of factorial experiments.
Description: This package facilitates easy analysis of factorial
experiments, including purely within-Ss designs (a.k.a.
"repeated measures"), purely between-Ss designs, and mixed
within-and-between-Ss designs. The functions in this package
provide easy access to descriptive statistics, ANOVA,
permutation tests, and visualization of results.
Diff between ez versions 1.4.2 dated 2009-10-07 and 1.5 dated 2009-12-04
CHANGES | 3 +++ DESCRIPTION | 8 ++++---- R/ez-internal.R | 10 ++++++++-- R/ezPlot.R | 3 ++- R/ezStats.R | 3 ++- man/ezPlot.Rd | 4 ++++ man/ezStats.Rd | 4 ++++ 7 files changed, 27 insertions(+), 8 deletions(-)
Author: Michael Hahsler, Christian Buchta, Bettina Gruen and Kurt
Hornik
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing, manipulating
and analyzing transaction data and patterns (frequent itemsets
and association rules). Also provides interfaces to C
implementations of the association mining algorithms Apriori
and Eclat by C. Borgelt.
Diff between arules versions 1.0-0 dated 2009-03-24 and 1.0-1 dated 2009-12-03
DESCRIPTION | 8 NAMESPACE | 3 R/apriori.R | 9 R/eclat.R | 7 R/itemMatrix.R | 20 R/itemsets.R | 2 data/Epub.rda |binary inst/CITATION | 20 inst/doc/arules.Rnw | 6 inst/doc/arules.pdf | 7817 +++++++++++++++++++++---------------------- man/Epub.Rd | 4 man/WRITE.Rd | 2 man/dissimilarity.Rd | 2 man/itemMatrix-class.Rd | 6 man/tidLists-class.Rd | 2 tests/associations.Rout.save | 12 tests/extract.Rout.save | 12 tests/interfaces.Rout.save | 27 tests/matrix.Rout.save | 14 tests/measures.Rout.save | 18 tests/sets.Rout.save | 15 tests/transactions.Rout.save | 26 22 files changed, 4067 insertions(+), 3965 deletions(-)
Author: Frank Schaarschmidt, Daniel Gerhard
Title: Confidence intervals for two sample comparisons
Description: Calculation of the parametric, nonparametric confidence
intervals for the difference or ratio of location parameters
and for the difference, ratio and odds-ratio of binomial
proportions for comparison of independent samples. CI are not
adjusted for multiplicity. A by statement allows calculation of
CI separately for the levels of further factors. Please note
that, when a (generalized) linear model can be reasonably
assumed, there are smarter methods for CI calculation available
than are implemented in this package!
Diff between pairwiseCI versions 0.1-17 dated 2009-10-14 and 0.1-19 dated 2009-12-03
DESCRIPTION | 8 ++++---- R/pairwiseMEP.data.frame.R | 1 + R/pairwiseTest.R | 11 +++++------ R/pairwiseTestCont.R | 4 +--- R/pairwiseTestProp.R | 4 +--- man/as.data.frame.pairwiseCI.Rd | 7 +++---- man/as.data.frame.pairwiseMEP.Rd | 15 ++++++++------- man/pairwiseCI.Rd | 11 ++++------- man/pairwiseMEP.Rd | 6 ++++-- man/pairwiseTest.Rd | 6 +----- man/pairwiseTestInt.Rd | 6 ++---- man/plotCI.pairwiseMEP.Rd | 8 +++++--- 12 files changed, 39 insertions(+), 48 deletions(-)
Author: Michael Friendly and Stephane Dray
Title: Guerry: maps, data and methods related to Guerry (1833) "Moral
Statistics of France"
Description: This package comprises maps of France in 1830, data from
A.-M. Guerry and others and statistical and graphic methods
related to Guerry's "Moral Statistics of France".
Diff between Guerry versions 1.1 dated 2009-10-30 and 1.3 dated 2009-12-03
DESCRIPTION | 14 ++++++-------- R |only inst/ChangeLog | 13 +++++++++++-- inst/doc |only man/Guerry-package.Rd | 31 ++++++++++++++++++++++++------- man/gfrance.Rd | 20 +++++++++++++++++--- man/gfrance85.Rd | 5 ++++- man/thinnedSpatialPoly.Rd |only 8 files changed, 62 insertions(+), 21 deletions(-)
Author: Timothy H. Keitt
Diff between rgdal versions 0.6-21 dated 2009-11-11 and 0.6-22 dated 2009-12-03
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
ChangeLog | 7 ++++++-
DESCRIPTION | 8 ++++----
R/sp_gdal.R | 24 +++++++++++++++++++++---
inst/ChangeLog | 7 ++++++-
src/gdal-bindings.cpp | 28 ++++++++++++++++++++++++++++
5 files changed, 65 insertions(+), 9 deletions(-)
Author: Emmanuel Paradis
Title: Population and Evolutionary Genetics Analysis System
Description: pegas provides functions for reading, writing, plotting,
analysing, and manipulating allelic and haplotypic data, and
for the analysis of population nucleotide sequences including
coalescence analyses.
Diff between pegas versions 0.2 dated 2009-10-07 and 0.3 dated 2009-12-03
ChangeLog | 40 ++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 16 ++++++++-------- R/IO.R | 18 ++++++++++++++---- R/amova.R | 7 +++++-- R/conversion.R | 22 +++++++++++----------- R/haplotype.R | 28 ++++++++++++++++++++-------- R/heterozygosity.R | 4 ++-- R/summary.loci.R | 39 ++++++++++++++++++++++++++++++++++----- inst |only man/Fst.Rd | 17 +++++++++++++---- man/MMD.Rd | 4 ++-- man/R2.test.Rd | 10 +++++++--- man/amova.Rd | 15 ++++++++------- man/bind.loci.Rd |only man/conversion.Rd | 37 +++++++++++++++++++++++++++---------- man/edit.loci.Rd |only man/haploNet.Rd | 38 ++++++++++++++++++++++++++++---------- man/haplotype.Rd | 25 +++++++++++++++++++------ man/heterozygosity.Rd | 19 ++++++++++++++----- man/hw.test.Rd | 12 ++++++++---- man/nuc.div.Rd | 6 +++--- man/pegas-package.Rd | 4 ++-- man/read.gtx.Rd | 9 +++++---- man/read.loci.Rd | 37 ++++++++++++++++++++++++------------- man/site.spectrum.Rd | 29 ++++++++++++++--------------- man/summary.loci.Rd | 14 ++++++++------ man/tajima.test.Rd | 2 +- man/theta.h.Rd | 13 +++++++++++-- man/theta.k.Rd | 16 ++++++++++++---- man/theta.s.Rd | 6 +++--- man/theta.tree.Rd | 9 +++++++++ man/utilities.Rd | 7 ++++++- man/write.loci.Rd | 9 ++++----- 33 files changed, 362 insertions(+), 150 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.08-04.02 dated 2009-10-01 and 0.08-04.04 dated 2009-12-03
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 9 ++++++
DESCRIPTION | 10 ++-----
R/AllInternal.R | 76 +++++++++++++++++++++++++++---------------------------
R/mi.binary.R | 15 +++++-----
R/mi.continuous.R | 16 +++++------
R/mi.count.R | 15 ++++------
6 files changed, 74 insertions(+), 67 deletions(-)
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Michael Friendly, Patrick
Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick
Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen,
Andrew Niccolai, Tom Short and Ben Stabler
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Diff between maptools versions 0.7-26 dated 2009-09-18 and 0.7-28 dated 2009-12-03
maptools-0.7-26/maptools/man/Map2poly.Rd |only maptools-0.7-26/maptools/man/get.Pcent.Rd |only maptools-0.7-26/maptools/man/maptools.Rd |only maptools-0.7-26/maptools/man/plot.Map.Rd |only maptools-0.7-26/maptools/man/plot.polylist.Rd |only maptools-0.7-26/maptools/man/read.shape.Rd |only maptools-0.7-26/maptools/man/spChFIDs-methods.Rd |only maptools-0.7-26/maptools/man/subset.polylist.Rd |only maptools-0.7-26/maptools/man/write.linelistShape.Rd |only maptools-0.7-26/maptools/man/write.pointShape.Rd |only maptools-0.7-26/maptools/man/write.polylistShape.Rd |only maptools-0.7-28/maptools/ChangeLog | 51 +++++++++++++++++++- maptools-0.7-28/maptools/DESCRIPTION | 18 +++---- maptools-0.7-28/maptools/INDEX | 16 +----- maptools-0.7-28/maptools/NAMESPACE | 23 +++++---- maptools-0.7-28/maptools/R/DP.R |only maptools-0.7-28/maptools/R/dotsinpolys.R | 4 - maptools-0.7-28/maptools/R/sp_bind.R | 49 ------------------- maptools-0.7-28/maptools/data/gpcholes.rda |binary maptools-0.7-28/maptools/inst/ChangeLog | 51 +++++++++++++++++++- maptools-0.7-28/maptools/inst/old_man |only maptools-0.7-28/maptools/man/dotsInPolys.Rd | 12 ---- maptools-0.7-28/maptools/man/getinfo.shape.Rd |only maptools-0.7-28/maptools/man/holepolys.Rd | 6 +- maptools-0.7-28/maptools/man/leglabs.Rd |only maptools-0.7-28/maptools/man/readShapeLines.Rd | 2 maptools-0.7-28/maptools/man/readShapePoints.Rd | 2 maptools-0.7-28/maptools/man/readShapePoly.Rd | 2 maptools-0.7-28/maptools/man/readShapeSpatial.Rd | 6 +- maptools-0.7-28/maptools/man/spCbind-methods.Rd | 2 maptools-0.7-28/maptools/man/spRbind-methods.Rd | 2 maptools-0.7-28/maptools/man/symbolsInPolys.Rd | 9 --- maptools-0.7-28/maptools/man/thinnedSpatialPoly.Rd |only 33 files changed, 142 insertions(+), 113 deletions(-)
Author: Original by Jay L. Devore, modifications by Douglas Bates
Diff between Devore7 versions 0.7.2 dated 2009-10-13 and 0.7.3 dated 2009-12-03
Title: Data sets from Devore's "Prob and Stat for Eng (7th ed)"
Description: Data sets and sample analyses from Jay L. Devore (2008),
"Probability and Statistics for Engineering and the Sciences
(7th ed)", Thomson.
DESCRIPTION | 7
NEWS |only
data/ex08.57.R | 2
inst/doc/Devore7.pdf | 3053 +++++++++++++++++++++++++--------------------------
4 files changed, 1542 insertions(+), 1520 deletions(-)
Author: David Meyer
Diff between StatDataML versions 1.0-18 dated 2009-04-26 and 1.0-19 dated 2009-12-02
Title: implementation of the StatDataML proposal
Description: read and write StatDataML files
DESCRIPTION | 8 -
R/handlers.R | 134 ++++++++++-----------
R/readArraySDML.R | 294 ++++++++++++++++++++++++-----------------------
R/readDimensionSDML.R | 22 ++-
R/readListSDML.R | 17 +-
R/readSDML.R | 55 ++++----
R/readTypeSDML.R | 78 +++++++-----
R/writeDescriptionSDML.R | 32 ++---
R/writeSDML.R | 49 +++----
man/readSDML.Rd | 24 +--
10 files changed, 369 insertions(+), 344 deletions(-)
Author: Edzer J. Pebesma
Diff between gstat versions 0.9-64 dated 2009-11-03 and 0.9-65 dated 2009-12-02
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
DESCRIPTION | 8
NAMESPACE | 2
R/fit.variogram.reml.R | 2
R/gstat.R | 2
R/krige0.R |only
R/predict.gstat.R | 2
R/variogram.default.R | 2
demo/00Index | 1
demo/comp_geoR.R |only
inst/ChangeLog |only
inst/doc/gstat.pdf |30815 ++++++++++++++++++++++++-------------------------
man/gstat.Rd | 2
man/krige.Rd | 39
man/variogram.Rd | 2
src/data.c | 10
src/gls.c | 3
src/glvars.c | 2
src/lex.c | 43
src/lex.l | 3
src/parse.c | 551
src/parse.h | 44
src/random.c | 2
src/version.h | 6
tests/krige0.R |only
tests/krige0.Rout.save |only
tests/vdist.Rout.save |only
26 files changed, 15899 insertions(+), 15642 deletions(-)
Author: Bernhard Meindl
Title: statistical disclosure control for tabular data
Description: R-Package for statistical disclosure control for tabular
data.
Diff between sdcTable versions 0.0.2 dated 2009-01-26 and 0.0.6 dated 2009-12-02
DESCRIPTION | 23 - NAMESPACE | 2 R/calcSubset.r | 62 -- R/createFullData.r | 546 +++++++++--------------- R/genCodesFromFile.r |only R/processTableHITAS.r | 54 -- R/processTableHYPERCUBE.r | 995 ++++++++++++++++++++++----------------------- R/protectTable.r | 42 - R/splitPrimarySupps.r | 54 -- R/zzz.R | 5 data/exampleFullData.RData |binary inst |only man/createFullData.Rd | 36 + man/exampleFullData.Rd | 2 man/genCodesFromFile.Rd |only man/protectTable.Rd | 16 16 files changed, 829 insertions(+), 1008 deletions(-)
Author: Edzer Pebesma
Diff between intamapInteractive versions 1.0-7 dated 2009-10-05 and 1.0-8 dated 2009-12-02
More information about intamapInteractive at CRAN
Title: procedures for automated interpolation - methods only to be used
interactively, not included in intamap package
Description: A package that provides additional functionality for
interpolation spatial interpolation.
DESCRIPTION | 12 +--
R/calculateMukv.R | 25 ++----
R/optimizeNetwork.R | 18 +++-
R/ssaMap.R | 65 ++++++++++++----
R/ssaOptim.R | 56 ++++++++++++--
man/biasCorr.Rd | 12 ++-
man/optimizeNetwork.Rd | 161 ++++++++++++++++++++++++++++-------------
man/ssaOptim.Rd | 20 ++++-
tests/optimizingTest.R | 16 ++--
tests/optimizingTest.Rout.save | 26 +++---
10 files changed, 286 insertions(+), 125 deletions(-)
Permanent link
Author: Chong Gu
Diff between gss versions 1.0-5 dated 2009-03-10 and 1.1-0 dated 2009-12-02
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
gss-1.0-5/gss/src/dnewton1.f |only
gss-1.0-5/gss/src/hrkl.f |only
gss-1.0-5/gss/src/hzdnewton1.f |only
gss-1.0-5/gss/src/ratfor/dnewton1.r |only
gss-1.0-5/gss/src/ratfor/hrkl.r |only
gss-1.0-5/gss/src/ratfor/hzdnewton1.r |only
gss-1.1-0/gss/ChangeLog | 17 +
gss-1.1-0/gss/DESCRIPTION | 11 -
gss-1.1-0/gss/INDEX | 16 +
gss-1.1-0/gss/R/cdssden.R | 29 ++-
gss-1.1-0/gss/R/drkpk.R | 59 ++++--
gss-1.1-0/gss/R/dssden.R | 29 ++-
gss-1.1-0/gss/R/grkpk.R | 60 ++++--
gss-1.1-0/gss/R/gssanova.R | 18 +-
gss-1.1-0/gss/R/gssanova0.R | 2
gss-1.1-0/gss/R/hzdrate.sshzd.R | 6
gss-1.1-0/gss/R/predict.ssllrm.R |only
gss-1.1-0/gss/R/print.R | 21 ++
gss-1.1-0/gss/R/project.gssanova.R | 29 +--
gss-1.1-0/gss/R/project.ssanova.R | 33 ++-
gss-1.1-0/gss/R/project.ssden.R | 65 +++----
gss-1.1-0/gss/R/project.sshzd.R | 71 ++++----
gss-1.1-0/gss/R/project.sshzd1.R |only
gss-1.1-0/gss/R/project.ssllrm.R |only
gss-1.1-0/gss/R/rkpk.R | 62 ++++---
gss-1.1-0/gss/R/ssanova.R | 19 +-
gss-1.1-0/gss/R/ssanova0.R | 2
gss-1.1-0/gss/R/ssden.R | 47 ++---
gss-1.1-0/gss/R/sshzd.R | 130 ++++++++++----
gss-1.1-0/gss/R/sshzd1.R |only
gss-1.1-0/gss/R/ssllrm.R |only
gss-1.1-0/gss/man/drkpk.Rd | 29 ++-
gss-1.1-0/gss/man/gssanova.Rd | 6
gss-1.1-0/gss/man/gssanova0.Rd | 2
gss-1.1-0/gss/man/predict.ssanova.Rd | 6
gss-1.1-0/gss/man/predict.ssllrm.Rd |only
gss-1.1-0/gss/man/print.Rd | 4
gss-1.1-0/gss/man/project.Rd | 12 +
gss-1.1-0/gss/man/rkpk.Rd | 10 -
gss-1.1-0/gss/man/rkpk0.Rd | 6
gss-1.1-0/gss/man/ssanova.Rd | 27 ++-
gss-1.1-0/gss/man/ssden.Rd | 32 ++-
gss-1.1-0/gss/man/sshzd.Rd | 30 ++-
gss-1.1-0/gss/man/ssllrm.Rd |only
gss-1.1-0/gss/src/dcoef.f | 21 +-
gss-1.1-0/gss/src/dcore.f | 67 +++----
gss-1.1-0/gss/src/dcrdr.f | 49 ++---
gss-1.1-0/gss/src/ddeev.f | 219 ++++++++++++-------------
gss-1.1-0/gss/src/deval.f | 25 +-
gss-1.1-0/gss/src/dgold.f | 53 ++----
gss-1.1-0/gss/src/dmcdc.f | 37 ++--
gss-1.1-0/gss/src/dmudr.f | 15 -
gss-1.1-0/gss/src/dmudr1.f | 197 +++++++++++-----------
gss-1.1-0/gss/src/dnewton.f | 289 ++++++++++++++++++++++++++++++++-
gss-1.1-0/gss/src/dqrslm.f | 29 +--
gss-1.1-0/gss/src/dsidr.f | 24 +-
gss-1.1-0/gss/src/dsms.f | 35 ++-
gss-1.1-0/gss/src/dstup.f | 19 +-
gss-1.1-0/gss/src/dsytr.f | 35 ++-
gss-1.1-0/gss/src/dtrev.f | 28 +--
gss-1.1-0/gss/src/hzdaux.f | 176 +++++++++++++++++++-
gss-1.1-0/gss/src/hzdnewton.f | 276 +++++++++++++++++++++++++++++++
gss-1.1-0/gss/src/hzdnewton10.f |only
gss-1.1-0/gss/src/llrmnewton.f |only
gss-1.1-0/gss/src/ratfor/dnewton.r | 204 +++++++++++++++++++++++
gss-1.1-0/gss/src/ratfor/hzdaux.r | 132 +++++++++++++++
gss-1.1-0/gss/src/ratfor/hzdnewton.r | 188 +++++++++++++++++++++
gss-1.1-0/gss/src/ratfor/hzdnewton10.r |only
gss-1.1-0/gss/src/ratfor/llrmnewton.r |only
69 files changed, 2282 insertions(+), 726 deletions(-)
Author: Vincent Calcagno
Diff between glmulti versions 0.6-1 dated 2009-12-01 and 0.6-2 dated 2009-12-02
Title: GLM model selection and multimodel inference made easy
Description: Automated model selection for GLMs. Provides a wrapper for
glm and similar functions, automatically generating all
possible models (under constraints set by the user) with the
specified response and explanatory variables, and finding the
best models in terms of some Information Criterion (AIC, AICc
or BIC). Can handle very large numbers of candidate models.
Features a Genetic Algorithm to find the best models when an
exhaustive screening of the candidates is not feasible.
glmulti-0.6-1/glmulti/.onLoad.R |only
glmulti-0.6-2/glmulti/ChangeLog | 8 +++
glmulti-0.6-2/glmulti/DESCRIPTION | 6 +-
glmulti-0.6-2/glmulti/R/glmulti.r | 25 +++++++----
glmulti-0.6-2/glmulti/R/onLoad.R |only
glmulti-0.6-2/glmulti/inst/java/glmulti.jar |binary
glmulti-0.6-2/glmulti/inst/java/glmulti/ModelGenerator.class |binary
7 files changed, 26 insertions(+), 13 deletions(-)
Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some
standard tree-ring analyses.
Diff between dplR versions 1.2 dated 2009-10-27 and 1.2.1 dated 2009-12-02
DESCRIPTION | 8 ++++---- R/corr.rwl.seg.R | 10 ++++++---- R/detrend.series.R | 3 +-- R/ffcsaps.R | 12 +++++++++--- R/normalize.xdate.R | 1 - 5 files changed, 20 insertions(+), 14 deletions(-)
Author: Henning Redestig
Title: CCMN and other noRMalizatioN methods for metabolomics data
Description: Implements the Cross-contribution Compensating Multiple
standard Normalization (CCMN) method and other normalization
algorithms.
Diff between crmn versions 0.0.7 dated 2009-11-30 and 0.0.8 dated 2009-12-02
DESCRIPTION | 6 R/norm.R | 28 - inst/doc/crmn.pdf | 1306 +++++++++++++++++++++++++++--------------------------- man/normFit.Rd | 8 4 files changed, 678 insertions(+), 670 deletions(-)
Author: Yihui Xie
Title: Demonstrate Animations in Statistics
Description: This package consists of various functions for animations
in statistics, covering many areas such as probability theory,
mathematical statistics, multivariate statistics, nonparametric
statistics, sampling survey, linear models, time series,
computational statistics, data mining and machine learning.
These functions might be of help in teaching statistics and
data analysis.
Diff between animation versions 1.0-9 dated 2009-11-12 and 1.0-10 dated 2009-12-02
DESCRIPTION | 10 +++++----- R/MC.hitormiss.R |only R/MC.samplemean.R |only R/ecol.death.sim.R | 1 + R/price.ani.R |only R/saveLatex.R | 2 +- R/saveMovie.R | 10 ++++++---- data/vanke1127.rda |only inst/NEWS | 41 ++++++++++++++++++++++++++++++++++------- man/MC.hitormiss.Rd |only man/MC.samplemean.Rd |only man/ecol.death.sim.Rd | 6 +++++- man/pollen.Rd | 4 ++-- man/price.ani.Rd |only man/saveLatex.Rd | 2 +- man/saveMovie.Rd | 7 +++++-- man/tidy.source.Rd | 2 +- man/vanke1127.Rd |only 18 files changed, 61 insertions(+), 24 deletions(-)
Author: Felipe de Mendiburu
Title: Statistical Procedures for Agricultural Research
Description: Agricolae was presented on 28 August 2009 in the thesis "A
statistical analysis tool for agricultural research" to obtain
the degree of Master on science, mention Systems Engineering,
of the facultad de ingenieria industrial y de sistemas -
Universidad Nacional de Ingenieria, Lima-Peru (UNI), being
approved with the qualification of 18.14 in a scale from 0 to
20. The thesis includes a satisfaction survey of the library,
with an index quality of the software of 0.8 in scale of 0-1.
These functions are currently used by the International Potato
Center (CIP), the Universidad Nacional Agraria La Molina
(UNALM-PERU), and the Instituto Nacional de Innovacion Agraria
(INIA-PERU). It comprises the functionality of statistical
analysis into experimental designs applied specially in field
experiments in agriculture and plant breeding: Lattice,
factorial, complete and incomplete block, Latin Square, Graeco,
Alpha designs, Cyclic, split and strip plot designs, comparison
of multi-location trials, comparison between treatments,
resampling, simulation, biodiversity indexes and consensus
cluster.
Diff between agricolae versions 1.0-7 dated 2009-04-20 and 1.0-8 dated 2009-12-02
DESCRIPTION | 38 ++++++++++++++++++++++---------------- R/AMMI.R | 14 ++++++-------- R/LSD.test.R | 19 ++++++++++++------- R/PBIB.test.R | 2 +- R/design.crd.R | 4 ++-- R/design.dau.R |only R/design.lattice.R | 2 +- R/design.split.R |only R/design.strip.R |only R/durbin.test.R | 7 ++++--- R/friedman.R | 16 +++++++++------- R/kruskal.R | 6 ++---- R/resampling.model.R | 2 +- R/simulation.model.R | 2 +- man/AMMI.Rd | 10 ++++------ man/AMMI.contour.Rd | 2 +- man/PBIB.test.Rd | 2 +- man/RioChillon.Rd | 1 - man/agricolae.package.Rd | 6 +++--- man/design.dau.Rd |only man/design.split.Rd |only man/design.strip.Rd |only man/friedman.Rd | 1 - man/kruskal.Rd | 1 - man/resampling.model.Rd | 26 +++++++++++++++----------- man/simulation.model.Rd | 18 +++++++++--------- man/strip.plot.Rd | 4 ++++ 27 files changed, 98 insertions(+), 85 deletions(-)
Author: Valerie Obenchain
Title: Data retrieval from a Labkey database
Description: This package imports data from a labkey database into an R
data frame
Diff between Rlabkey versions 0.0.8 dated 2009-07-03 and 0.0.9 dated 2009-12-02
Rlabkey-0.0.8/Rlabkey/LICENSE |only Rlabkey-0.0.8/Rlabkey/R/makeUrl.R |only Rlabkey-0.0.9/Rlabkey/DESCRIPTION | 8 ++-- Rlabkey-0.0.9/Rlabkey/NEWS | 3 + Rlabkey-0.0.9/Rlabkey/R/makeDF.R | 22 +++++++----- Rlabkey-0.0.9/Rlabkey/R/parseHeader.R | 6 +-- Rlabkey-0.0.9/Rlabkey/license |only Rlabkey-0.0.9/Rlabkey/man/labkey.executeSql.Rd | 43 +++++++++++++------------ Rlabkey-0.0.9/Rlabkey/man/labkey.selectRows.Rd | 32 +++++++++--------- Rlabkey-0.0.9/Rlabkey/man/makeFilter.Rd | 14 ++++---- 10 files changed, 70 insertions(+), 58 deletions(-)
Author: Ian Fellows
Title: Deducer
Description: An intuitive, cross-platform graphical data analysis
system. It uses menus and dialogs to guide the user efficiently
through the data manipulation and analysis process, and has an
excel like spreadsheet for easy data frame visualization and
editing. Deducer works best when used with the Java based R GUI
JGR, but the dialogs can be called from the command line.
Dialogs have also been integrated into the Windows Rgui.
Diff between Deducer versions 0.2-0 dated 2009-11-02 and 0.2-1 dated 2009-12-02
Deducer-0.2-0/Deducer/man/define.groups.Rd |only Deducer-0.2-1/Deducer/DESCRIPTION | 10 Deducer-0.2-1/Deducer/R/Deducer.R | 181 ++++++---- Deducer-0.2-1/Deducer/R/addMenu.R |only Deducer-0.2-1/Deducer/R/contingency.tables.R | 27 - Deducer-0.2-1/Deducer/R/cor.matrix.R | 31 + Deducer-0.2-1/Deducer/R/descriptive.table.R | 26 - Deducer-0.2-1/Deducer/R/ggcorplot.R | 9 Deducer-0.2-1/Deducer/R/k.sample.test.R | 26 - Deducer-0.2-1/Deducer/R/one.sample.test.R | 15 Deducer-0.2-1/Deducer/R/onesample.plot.R | 42 +- Deducer-0.2-1/Deducer/R/oneway.plot.R | 49 +- Deducer-0.2-1/Deducer/R/qscatter_array.R | 42 +- Deducer-0.2-1/Deducer/R/recode.variables.R | 2 Deducer-0.2-1/Deducer/R/rocplot.R | 4 Deducer-0.2-1/Deducer/R/sort.data.frame.R | 2 Deducer-0.2-1/Deducer/R/summary.lm.R | 1 Deducer-0.2-1/Deducer/R/two.sample.test.R | 42 -- Deducer-0.2-1/Deducer/R/util.R | 68 ++- Deducer-0.2-1/Deducer/inst/java/deducer.jar |binary Deducer-0.2-1/Deducer/inst/javasrc/deducer/Deducer.java | 54 ++ Deducer-0.2-1/Deducer/inst/javasrc/deducer/data/DataFrameWindow.java | 6 Deducer-0.2-1/Deducer/inst/javasrc/deducer/menu/ContingencyDialog.java | 8 Deducer-0.2-1/Deducer/inst/javasrc/deducer/menu/CorModel.java | 5 Deducer-0.2-1/Deducer/inst/javasrc/deducer/menu/DescriptivesDialog.java | 15 Deducer-0.2-1/Deducer/inst/javasrc/deducer/menu/KSampleDialog.java | 8 Deducer-0.2-1/Deducer/inst/javasrc/deducer/menu/OneSampleDialog.java | 15 Deducer-0.2-1/Deducer/inst/javasrc/deducer/menu/OneWayPlotModel.java | 6 Deducer-0.2-1/Deducer/inst/javasrc/deducer/menu/twosample/TwoSampleModel.java | 68 +-- Deducer-0.2-1/Deducer/man/add.cross.strata.test.Rd | 6 Deducer-0.2-1/Deducer/man/add.mantel.haenszel.Rd | 6 Deducer-0.2-1/Deducer/man/add.test.Rd | 6 Deducer-0.2-1/Deducer/man/contingency.tables.Rd | 10 Deducer-0.2-1/Deducer/man/cor.matrix.Rd | 26 - Deducer-0.2-1/Deducer/man/d.Rd |only Deducer-0.2-1/Deducer/man/deducer.addmenu.Rd |only Deducer-0.2-1/Deducer/man/descriptive.table.Rd | 31 + Deducer-0.2-1/Deducer/man/dich.Rd |only Deducer-0.2-1/Deducer/man/extract.counts.Rd | 2 Deducer-0.2-1/Deducer/man/ggcorplot.Rd | 4 Deducer-0.2-1/Deducer/man/k.sample.test.Rd | 19 - Deducer-0.2-1/Deducer/man/one.sample.test.Rd | 28 - Deducer-0.2-1/Deducer/man/onesample.plot.Rd | 13 Deducer-0.2-1/Deducer/man/oneway.plot.Rd | 10 Deducer-0.2-1/Deducer/man/qscatter_array.Rd | 19 - Deducer-0.2-1/Deducer/man/two.sample.test.Rd | 26 - 46 files changed, 554 insertions(+), 414 deletions(-)
Author: Simon Wood
Diff between mgcv versions 1.6-0 dated 2009-11-18 and 1.6-1 dated 2009-12-01
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.
DESCRIPTION | 6 +++---
R/mgcv.r | 8 ++++----
R/smooth.r | 13 +++++++++----
changeLog | 14 ++++++++++++++
man/bam.Rd | 5 +++--
man/cSplineDes.Rd | 22 ++++++++++++++++++++--
man/choose.k.Rd | 33 ++++++++++++++++++++++++++++++---
po/R-mgcv.pot | 3 +++
8 files changed, 86 insertions(+), 18 deletions(-)
Author: Don Barkauskas
Title: Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance
Mass Spectrometry Data
Description: This package was developed partially with funding from the
NIH Training Program in Biomolecular Technology
(2-T32-GM08799).
Diff between FTICRMS versions 0.7 dated 2009-02-15 and 0.8 dated 2009-12-01
DESCRIPTION | 27 +++--- R/FTICRMS-internal.R | 35 ++++---- R/baseline.R | 34 ++++---- R/display.tests.R | 11 ++ R/locate.peaks.R | 31 +++++-- R/make.par.file.R | 23 +++-- R/run.analysis.R | 156 ++++++++++++++++++++++++-------------- R/run.baselines.R | 14 ++- R/run.cluster.matrix.R | 188 ++++++++++++++++++++++++++++++++++------------ R/run.lrg.peaks.R | 39 +++++++-- R/run.peaks.R | 32 ++++++- R/run.strong.peaks.R | 32 ++++++- man/FTICRMS-internal.Rd | 2 man/FTICRMS-package.Rd | 4 man/baseline.Rd | 137 +++++++++++++++++++++------------ man/display.tests.Rd | 62 ++++++++++----- man/extract.pars.Rd | 68 ++++++++++++---- man/locate.peaks.Rd | 62 +++++++++------ man/make.par.file.Rd | 87 +++++++++++++-------- man/run.all.Rd | 72 +++++++++++------ man/run.analysis.Rd | 166 ++++++++++++++++++++++++++++------------ man/run.baselines.Rd | 63 +++++++++++---- man/run.cluster.matrix.Rd | 184 +++++++++++++++++++++++++++++++-------------- man/run.lrg.peaks.Rd | 86 +++++++++++++-------- man/run.peaks.Rd | 94 +++++++++++++++-------- man/run.strong.peaks.Rd | 120 +++++++++++++++++++++-------- 26 files changed, 1258 insertions(+), 571 deletions(-)
Author: Andreas Alfons
Title: Simulation Framework
Description: A general framework for statistical simulation.
Diff between simFrame versions 0.1.1 dated 2009-09-03 and 0.1.2 dated 2009-12-01
simFrame-0.1.1/simFrame/R/allClasses.R |only simFrame-0.1.1/simFrame/R/allGenerics.R |only simFrame-0.1.2/simFrame/DESCRIPTION | 8 ++++---- simFrame-0.1.2/simFrame/NAMESPACE | 2 ++ simFrame-0.1.2/simFrame/NEWS | 11 +++++++++++ simFrame-0.1.2/simFrame/R/aaaClasses.R |only simFrame-0.1.2/simFrame/R/aaaGenerics.R |only simFrame-0.1.2/simFrame/R/aggregate.R |only simFrame-0.1.2/simFrame/R/contaminate.R | 6 +++++- simFrame-0.1.2/simFrame/R/initialize.R | 9 +++++++++ simFrame-0.1.2/simFrame/R/setNA.R | 5 +++-- simFrame-0.1.2/simFrame/R/simXyplot.R | 2 +- simFrame-0.1.2/simFrame/man/NAControl-class.Rd | 3 +++ simFrame-0.1.2/simFrame/man/aggregate-methods.Rd |only simFrame-0.1.2/simFrame/man/plot-methods.Rd | 8 ++++---- simFrame-0.1.2/simFrame/man/simFrame-package.Rd | 7 ++++--- 16 files changed, 46 insertions(+), 15 deletions(-)
Author: Matthias Templ
Title: Statistical Disclosure Control methods for the generation of
public- and scientific-use files.
Description: Data from statistical agencies and other institutions are
mostly confidential. This package can be used for the
generation of save (micro)data, i.e. for the generation of
public- and scientific-use files. The package includes also a
graphical user interface.
Diff between sdcMicro versions 2.6.3 dated 2009-11-29 and 2.6.4 dated 2009-12-01
DESCRIPTION | 8 ++++---- R/sdcGUI.r | 6 +++--- inst/doc/Rplots.pdf |only inst/doc/sdcMicroPaper-001.eps |only inst/doc/sdcMicroPaper-001.pdf |only inst/doc/sdcMicroPaper.pdf |binary inst/doc/sdcMicroPaper.tex |only 7 files changed, 7 insertions(+), 7 deletions(-)
Author: John Boik
Diff between mixlow versions 0.01-2 dated 2009-05-11 and 0.02 dated 2009-12-01
Title: mixlow method for assessing drug synergism
Description: mixlow software for assessing drug synergism/antagonism
mixlow-0.01-2/mixlow/R/plotLoeweData.R |only
mixlow-0.01-2/mixlow/R/plotMixlowData.R |only
mixlow-0.01-2/mixlow/R/plotNlmeData.R |only
mixlow-0.01-2/mixlow/R/plotNlsData.R |only
mixlow-0.01-2/mixlow/data/loeweData.rda |only
mixlow-0.01-2/mixlow/data/mixlowData.rda |only
mixlow-0.01-2/mixlow/data/nlmeData.rda |only
mixlow-0.01-2/mixlow/data/nlsData.rda |only
mixlow-0.01-2/mixlow/data/trayData.rda |only
mixlow-0.01-2/mixlow/man/plotLoeweData.Rd |only
mixlow-0.01-2/mixlow/man/plotMixlowData.Rd |only
mixlow-0.01-2/mixlow/man/plotNlmeData.Rd |only
mixlow-0.01-2/mixlow/man/plotNlsData.Rd |only
mixlow-0.02/mixlow/CITATION |only
mixlow-0.02/mixlow/DESCRIPTION | 7
mixlow-0.02/mixlow/NAMESPACE | 25 +
mixlow-0.02/mixlow/R/LoeweCalculateScore.R | 5
mixlow-0.02/mixlow/R/LoeweCollectData.R | 2
mixlow-0.02/mixlow/R/LoeweGetCov.R | 95 +++++-
mixlow-0.02/mixlow/R/NlmeCalculateR2.R | 35 +-
mixlow-0.02/mixlow/R/NlmeCall.R | 43 +--
mixlow-0.02/mixlow/R/NlmeSetupCall.R | 19 -
mixlow-0.02/mixlow/R/NlsPlotGetData.R | 20 -
mixlow-0.02/mixlow/R/doLoewe.R | 251 +++++++++++++-----
mixlow-0.02/mixlow/R/doNlme.R | 47 ++-
mixlow-0.02/mixlow/R/doNls.R | 4
mixlow-0.02/mixlow/R/mixlowPlotGetData.R | 8
mixlow-0.02/mixlow/R/plot.loeweData.R |only
mixlow-0.02/mixlow/R/plot.mixlowData.R |only
mixlow-0.02/mixlow/R/plot.nlmeData.R |only
mixlow-0.02/mixlow/R/plot.nlsData.R |only
mixlow-0.02/mixlow/R/prepareData.R | 32 +-
mixlow-0.02/mixlow/R/print.loeweData.R |only
mixlow-0.02/mixlow/R/print.mixlowData.R |only
mixlow-0.02/mixlow/R/print.nlmeData.R |only
mixlow-0.02/mixlow/R/print.nlsData.R |only
mixlow-0.02/mixlow/R/readDataFile.R | 3
mixlow-0.02/mixlow/data/loeweData.RData |only
mixlow-0.02/mixlow/data/mixlowData.RData |only
mixlow-0.02/mixlow/data/nlmeData.RData |only
mixlow-0.02/mixlow/data/nlsData.RData |only
mixlow-0.02/mixlow/data/trayData.RData |only
mixlow-0.02/mixlow/inst/exdata/A549_vin_topo_data.txt |only
mixlow-0.02/mixlow/man/doLoewe.Rd | 2
mixlow-0.02/mixlow/man/doNlme.Rd | 23 -
mixlow-0.02/mixlow/man/doNls.Rd | 4
mixlow-0.02/mixlow/man/loeweData.Rd | 14 -
mixlow-0.02/mixlow/man/mixlow-package.Rd | 12
mixlow-0.02/mixlow/man/mixlowData.Rd | 10
mixlow-0.02/mixlow/man/nlmeData.Rd | 12
mixlow-0.02/mixlow/man/nlsData.Rd | 10
mixlow-0.02/mixlow/man/plot.loeweData.Rd |only
mixlow-0.02/mixlow/man/plot.mixlowData.Rd |only
mixlow-0.02/mixlow/man/plot.nlmeData.Rd |only
mixlow-0.02/mixlow/man/plot.nlsData.Rd |only
mixlow-0.02/mixlow/man/prepareData.Rd | 17 -
mixlow-0.02/mixlow/man/print.loeweData.Rd |only
mixlow-0.02/mixlow/man/print.mixlowData.Rd |only
mixlow-0.02/mixlow/man/print.nlmeData.Rd |only
mixlow-0.02/mixlow/man/print.nlsData.Rd |only
mixlow-0.02/mixlow/man/readDataFile.Rd | 8
61 files changed, 463 insertions(+), 245 deletions(-)
Author: Vincent Calcagno
Diff between glmulti versions 0.5-3 dated 2009-10-20 and 0.6-1 dated 2009-12-01
Title: GLM model selection and multimodel inference made easy
Description: Automated model selection for GLMs. Provides a wrapper for
glm and similar functions, automatically generating all
possible models (under constraints set by the user) with the
specified response and explanatory variables, and finding the
best models in terms of some Information Criterion (AIC, AICc
or BIC). Can handle very large numbers of candidate models.
Features a Genetic Algorithm to find the best models when an
exhaustive screening of the candidates is not feasible.
glmulti-0.5-3/glmulti/R/glmulti.R |only
glmulti-0.5-3/glmulti/R/onLoad.R |only
glmulti-0.6-1/glmulti/.onLoad.R | 16
glmulti-0.6-1/glmulti/ChangeLog |only
glmulti-0.6-1/glmulti/DESCRIPTION | 10
glmulti-0.6-1/glmulti/NAMESPACE | 17
glmulti-0.6-1/glmulti/R/glmulti.r |only
glmulti-0.6-1/glmulti/inst/java/MANIFEST.MF | 2
glmulti-0.6-1/glmulti/inst/java/glmulti.jar |binary
glmulti-0.6-1/glmulti/inst/java/glmulti/GLMModel.class |binary
glmulti-0.6-1/glmulti/inst/java/glmulti/ModelGenerator.class |binary
glmulti-0.6-1/glmulti/man/aic-methods.Rd |only
glmulti-0.6-1/glmulti/man/aic.Rd |only
glmulti-0.6-1/glmulti/man/aicc-methods.Rd |only
glmulti-0.6-1/glmulti/man/bic-methods.Rd |only
glmulti-0.6-1/glmulti/man/coef.glmulti.Rd |only
glmulti-0.6-1/glmulti/man/consensus-methods.Rd |only
glmulti-0.6-1/glmulti/man/consensus.Rd |only
glmulti-0.6-1/glmulti/man/getfit-methods.Rd |only
glmulti-0.6-1/glmulti/man/getfit.Rd |only
glmulti-0.6-1/glmulti/man/glmulti-class.Rd |only
glmulti-0.6-1/glmulti/man/glmulti-methods.Rd |only
glmulti-0.6-1/glmulti/man/glmulti.Rd | 204 +++++------
glmulti-0.6-1/glmulti/man/qaic-methods.Rd |only
glmulti-0.6-1/glmulti/man/qaicc-methods.Rd |only
glmulti-0.6-1/glmulti/man/summary.glmulti.Rd |only
glmulti-0.6-1/glmulti/man/write-methods.Rd |only
glmulti-0.6-1/glmulti/man/write.Rd |only
28 files changed, 132 insertions(+), 117 deletions(-)
Author: Arnost Komarek
Diff between glmmAK versions 1.3 dated 2009-04-27 and 1.3-1 dated 2009-12-01
Title: Generalized Linear Mixed Models
Description: Later
DESCRIPTION | 8 ++++----
R/cumlogit.R | 11 ++++++-----
R/cumlogit.help.R | 7 ++++---
3 files changed, 14 insertions(+), 12 deletions(-)